8TH8 | pdb_00008th8

Linker domain of Nexin-dynein regulatory complex from Tetrahymena thermophila

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF14772	Sperm tail (NYD-SP28)	Sperm tail	-	Family
B	PF14772	Sperm tail (NYD-SP28)	Sperm tail	-	Family
C	PF12799	Leucine Rich repeats (2 copies) (LRR_4)	Leucine Rich repeats (2 copies)	-	Repeat
D	PF13851	Growth-arrest specific micro-tubule binding (GAS)	Growth-arrest specific micro-tubule binding	-	Coiled-coil
E	PF13851	Growth-arrest specific micro-tubule binding (GAS)	Growth-arrest specific micro-tubule binding	-	Coiled-coil
F	PF13516	Leucine Rich repeat (LRR_6)	Leucine Rich repeat	-	Repeat
G	PF13516	Leucine Rich repeat (LRR_6)	Leucine Rich repeat	-	Repeat
H	PF24667	Dynein regulatory complex subunit 7 MORN domain (MORN_DRC7)	Dynein regulatory complex subunit 7 MORN domain	-	Repeat
H	PF24656	CEP76 peptidase-like domain (CEPT76_peptidase)	CEP76 peptidase-like domain	This entry represents a domain found in the middle of centrosomal protein of 76 kDa, a protein involved in regulation of centriole duplication to limit centriole duplication to once per cell cycle by preventing centriole reduplication [1]. This domai ...	This entry represents a domain found in the middle of centrosomal protein of 76 kDa, a protein involved in regulation of centriole duplication to limit centriole duplication to once per cell cycle by preventing centriole reduplication [1]. This domain is also found at the C-terminal of C2D2A/B, whose function is unknown, and in dynein regulatory complex subunit 7 (DRC7). In DRC7, this model covers the C-terminal part of the domain as it has an insertion not present in the other members of the entry. This domain is may adopt a fold related to peptidases.	Domain
L	PF00004	ATPase family associated with various cellular activities (AAA) (AAA)	ATPase family associated with various cellular activities (AAA)	AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2].	Domain
M [auth P]	PF23449	CFAP184 CBM-like domain (CBM-like_CFAP184)	CFAP184 CBM-like domain	This entry represents a domain found in Cilia- and flagella-associated protein 184 (also known as CCDC96, SwissProt:I7M6D6) from Tetrahymena thermophila and similar sequences. CFAP184 forms a complex with CFAP263, and acts as a regulator of ciliary b ...	This entry represents a domain found in Cilia- and flagella-associated protein 184 (also known as CCDC96, SwissProt:I7M6D6) from Tetrahymena thermophila and similar sequences. CFAP184 forms a complex with CFAP263, and acts as a regulator of ciliary beating that connects radial spoke 3 (RS3) to the inner dynein arm (IDA) and the nexin-dynein regulatory complex (N-DRC) [1]. This domain may have a CBM-like (carbohydrate-binding module) fold according to structure predictions and comparison.	Domain
M [auth P]	PF23448	CFAP184 CAP-like domain (CAP-like_CFAP184)	CFAP184 CAP-like domain	This entry represents a domain found in Cilia- and flagella-associated protein 184 (also known as CCDC96, SwissProt:I7M6D6) from Tetrahymena thermophila and similar sequences. CFAP184 forms a complex with CFAP263, and acts as a regulator of ciliary b ...	This entry represents a domain found in Cilia- and flagella-associated protein 184 (also known as CCDC96, SwissProt:I7M6D6) from Tetrahymena thermophila and similar sequences. CFAP184 forms a complex with CFAP263, and acts as a regulator of ciliary beating that connects radial spoke 3 (RS3) to the inner dynein arm (IDA) and the nexin-dynein regulatory complex (N-DRC) [1]. This domain may have a CAP-like (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) fold according to structure predictions and comparison.	Domain
N [auth Q], O [auth R]	PF13405	EF-hand domain (EF-hand_6)	EF-hand domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Dynein regulatory complex protein 1/2 N-terminal domain-containing protein	-	organelle assembly plasma membrane bounded cell projection organization axonemal dynein complex assembly protein-containing complex organization cell projection organization microtubule cytoskeleton organization plasma membrane bounded cell projection assembly cellular component organization cellular component biogenesis microtubule bundle formation organelle organization cellular component assembly protein-containing complex assembly cilium assembly organelle assembly plasma membrane bounded cell projection organization axonemal dynein complex assembly protein-containing complex organization cell projection organization microtubule cytoskeleton organization plasma membrane bounded cell projection assembly cellular component organization cellular component biogenesis microtubule bundle formation organelle organization cellular component assembly protein-containing complex assembly cilium assembly cellular process microtubule-based process cellular component organization or biogenesis axoneme assembly cytoskeleton organization cilium organization cell projection assembly regulation of biological process regulation of cilium movement regulation of cellular process regulation of microtubule-based process biological regulation microtubule-based movement regulation of microtubule-based movement cilium movement cilium-dependent cell motility cell motility cilium or flagellum-dependent cell motility	membrane-bounded organelle protein-containing complex intracellular anatomical structure catalytic complex axoneme ciliary plasm axonemal dynein complex dynein complex intracellular membraneless organelle cilium plasma membrane bounded cell projection intracellular organelle cell projection cellular anatomical structure membrane-bounded organelle protein-containing complex intracellular anatomical structure catalytic complex axoneme ciliary plasm axonemal dynein complex dynein complex intracellular membraneless organelle cilium plasma membrane bounded cell projection intracellular organelle cell projection cellular anatomical structure cytoskeleton organelle membraneless organelle microtubule associated complex cytoplasm microtubule cytoskeleton
B	Coiled-coil protein, putative	-	organelle assembly plasma membrane bounded cell projection organization axonemal dynein complex assembly protein-containing complex organization cell projection organization microtubule cytoskeleton organization plasma membrane bounded cell projection assembly cellular component organization cellular component biogenesis microtubule bundle formation organelle organization cellular component assembly protein-containing complex assembly cilium assembly organelle assembly plasma membrane bounded cell projection organization axonemal dynein complex assembly protein-containing complex organization cell projection organization microtubule cytoskeleton organization plasma membrane bounded cell projection assembly cellular component organization cellular component biogenesis microtubule bundle formation organelle organization cellular component assembly protein-containing complex assembly cilium assembly cellular process microtubule-based process cellular component organization or biogenesis axoneme assembly cytoskeleton organization cilium organization cell projection assembly regulation of biological process regulation of cilium movement regulation of cellular process regulation of microtubule-based process biological regulation microtubule-based movement regulation of microtubule-based movement cilium movement cilium-dependent cell motility cell motility cilium or flagellum-dependent cell motility	membrane-bounded organelle protein-containing complex intracellular anatomical structure catalytic complex axoneme ciliary plasm axonemal dynein complex dynein complex intracellular membraneless organelle cilium plasma membrane bounded cell projection intracellular organelle cell projection cellular anatomical structure membrane-bounded organelle protein-containing complex intracellular anatomical structure catalytic complex axoneme ciliary plasm axonemal dynein complex dynein complex intracellular membraneless organelle cilium plasma membrane bounded cell projection intracellular organelle cell projection cellular anatomical structure cytoskeleton organelle membraneless organelle microtubule associated complex cytoplasm microtubule cytoskeleton
C	LRRC48 protein	-	-	membrane-bounded organelle cell projection cellular anatomical structure organelle cilium plasma membrane bounded cell projection
D	Growth-arrest-specific microtubule-binding protein	small GTPase binding protein binding binding enzyme binding GTPase binding cytoskeletal protein binding microtubule binding tubulin binding	cellular process cell motility	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure Golgi apparatus organelle cytoplasm intracellular membrane-bounded organelle endomembrane system cell projection cilium motile cilium plasma membrane bounded cell projection polymeric cytoskeletal fiber membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure Golgi apparatus organelle cytoplasm intracellular membrane-bounded organelle endomembrane system cell projection cilium motile cilium plasma membrane bounded cell projection polymeric cytoskeletal fiber intracellular membraneless organelle cytoskeleton membraneless organelle supramolecular fiber microtubule supramolecular polymer supramolecular complex microtubule cytoskeleton
E	Growth-arrest-specific microtubule-binding protein	small GTPase binding protein binding binding enzyme binding GTPase binding cytoskeletal protein binding microtubule binding tubulin binding	cellular process cell motility	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure Golgi apparatus organelle cytoplasm intracellular membrane-bounded organelle endomembrane system cell projection cilium motile cilium plasma membrane bounded cell projection polymeric cytoskeletal fiber membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure Golgi apparatus organelle cytoplasm intracellular membrane-bounded organelle endomembrane system cell projection cilium motile cilium plasma membrane bounded cell projection polymeric cytoskeletal fiber intracellular membraneless organelle cytoskeleton membraneless organelle supramolecular fiber microtubule supramolecular polymer supramolecular complex microtubule cytoskeleton
F	Flagellar associated protein	-	-	-
G	Kinase domain protein	small GTPase binding protein binding binding enzyme binding GTPase binding GTPase regulator activity enzyme regulator activity enzyme activator activity GTPase activator activity molecular function activator activity nucleoside-triphosphatase regulator activity molecular function regulator activity	localization cellular localization nucleocytoplasmic transport transport nuclear transport establishment of localization in cell intracellular transport cellular process establishment of localization	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol perinuclear region of cytoplasm membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle
H	Coiled-coil lobo-like protein, putative	-	developmental process spermatogenesis sexual reproduction reproductive process multicellular organismal reproductive process developmental process involved in reproduction male gamete generation gamete generation cellular developmental process cell differentiation cellular process cell motility	membrane-bounded organelle cell projection cellular anatomical structure organelle cilium motile cilium plasma membrane bounded cell projection
I, Q [auth i]	EF-hand calcium-binding domain protein	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding	-	-
J	Dynein regulatory complex protein 9	-	cellular component organization organelle organization plasma membrane bounded cell projection organization cell projection organization cellular process cellular component organization or biogenesis cilium organization	cellular anatomical structure intracellular anatomical structure cytoplasm intracellular organelle cytoskeleton organelle membraneless organelle intracellular membraneless organelle membrane-bounded organelle cell projection cilium motile cilium plasma membrane bounded cell projection
K	Dynein regulatory complex protein 10	-	-	-
L	AAA family ATPase CDC48 subfamily protein	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity	-	-
M [auth P]	DUF4201 domain-containing protein	-	organelle assembly plasma membrane bounded cell projection organization cell projection organization plasma membrane bounded cell projection assembly cellular component biogenesis cellular component organization organelle organization cellular component assembly cilium assembly cellular process cellular component organization or biogenesis cilium organization cell projection assembly	membrane-bounded organelle intracellular anatomical structure axoneme ciliary plasm cilium intracellular membraneless organelle plasma membrane bounded cell projection intracellular organelle cell projection cellular anatomical structure cytoskeleton organelle membraneless organelle cytoplasm membrane-bounded organelle intracellular anatomical structure axoneme ciliary plasm cilium intracellular membraneless organelle plasma membrane bounded cell projection intracellular organelle cell projection cellular anatomical structure cytoskeleton organelle membraneless organelle cytoplasm ciliary basal body microtubule organizing center microtubule cytoskeleton
N [auth Q], O [auth R]	Calmodulin 7-2	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding	-	protein-containing complex intracellular anatomical structure intracellular membraneless organelle actin cytoskeleton myosin complex intracellular organelle cellular anatomical structure cytoskeleton organelle membraneless organelle myosin II complex
P [auth S], R [auth s]	Coiled-coil domain-containing protein 153	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR039505	Dynein regulatory complex protein 1/2, N-terminal	Domain
A	IPR039750	Dynein regulatory complex protein	Family
B	IPR039505	Dynein regulatory complex protein 1/2, N-terminal	Domain
B	IPR039750	Dynein regulatory complex protein	Family
C	IPR025875	Leucine rich repeat 4	Repeat
C	IPR032675	Leucine-rich repeat domain superfamily	Homologous Superfamily
C	IPR001611	Leucine-rich repeat	Repeat
C	IPR050576	Ciliary and flagellar integrity-associated protein	Family
D	IPR039308	Growth arrest-specific protein 8	Family
D	IPR025593	Growth arrest-specific protein 8 domain	Domain
E	IPR039308	Growth arrest-specific protein 8	Family
E	IPR025593	Growth arrest-specific protein 8 domain	Domain
F	IPR052201	Leucine-rich repeat-containing regulator of pluripotency	Family
F	IPR032675	Leucine-rich repeat domain superfamily	Homologous Superfamily
F	IPR001611	Leucine-rich repeat	Repeat
G	IPR032675	Leucine-rich repeat domain superfamily	Homologous Superfamily
G	IPR001611	Leucine-rich repeat	Repeat
G	IPR027038	Ran GTPase-activating protein	Family
H	IPR056291	Dynein regulatory complex subunit 7, MORN domain	Domain
H	IPR056290	CEP76/DRC7, peptidase-like domain	Domain
H	IPR038765	Papain-like cysteine peptidase superfamily	Homologous Superfamily
H	IPR033551	Dynein regulatory complex subunit 7	Family
H	IPR056292	Dynein regulatory complex subunit 7, C-terminal	Domain
I, Q [auth i]	IPR002048	EF-hand domain	Domain
I, Q [auth i]	IPR011992	EF-hand domain pair	Homologous Superfamily
J	IPR042618	Dynein regulatory complex protein 9	Family
K	IPR042815	Dynein regulatory complex protein 10	Family
L	IPR003959	ATPase, AAA-type, core	Domain
L	IPR052267	Nexin-Dynein Regulatory Complex Component	Family
L	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
M [auth P]	IPR056294	CFAP184, CAP-like domain	Domain
M [auth P]	IPR025254	CCDC113/CCDC96, coiled-coil	Domain
M [auth P]	IPR035940	CAP superfamily	Homologous Superfamily
M [auth P]	IPR051885	Coiled-coil domain-containing protein involved in ciliogenesis	Family
M [auth P]	IPR056295	CFAP184, CBM-like domain	Domain
N [auth Q], O [auth R]	IPR050230	Calmodulin/Myosin light chain/Troponin C-like	Family
N [auth Q], O [auth R]	IPR018247	EF-Hand 1, calcium-binding site	Binding Site
N [auth Q], O [auth R]	IPR002048	EF-hand domain	Domain
N [auth Q], O [auth R]	IPR011992	EF-hand domain pair	Homologous Superfamily
P [auth S], R [auth s]	IPR033585	Dynein regulatory complex protein 12-like	Family