8TH8 | pdb_00008th8

Linker domain of Nexin-dynein regulatory complex from Tetrahymena thermophila

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
G	PF13516	Leucine Rich repeat (LRR_6)	Leucine Rich repeat	-	Repeat
F	PF13516	Leucine Rich repeat (LRR_6)	Leucine Rich repeat	-	Repeat
E	PF13851	Growth-arrest specific micro-tubule binding (GAS)	Growth-arrest specific micro-tubule binding	-	Coiled-coil
D	PF13851	Growth-arrest specific micro-tubule binding (GAS)	Growth-arrest specific micro-tubule binding	-	Coiled-coil
C	PF12799	Leucine Rich repeats (2 copies) (LRR_4)	Leucine Rich repeats (2 copies)	-	Repeat
B	PF14772	Sperm tail (NYD-SP28)	Sperm tail	-	Family
N [auth Q], O [auth R]	PF13405	EF-hand domain (EF-hand_6)	EF-hand domain		Domain
L	PF00004	ATPase family associated with various cellular activities (AAA) (AAA)	ATPase family associated with various cellular activities (AAA)	AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2].	Domain
A	PF14772	Sperm tail (NYD-SP28)	Sperm tail	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
I, Q [auth i]	EF-hand calcium-binding domain protein	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding	-	-
H	Coiled-coil lobo-like protein, putative	-	developmental process spermatogenesis sexual reproduction reproductive process multicellular organismal reproductive process developmental process involved in reproduction male gamete generation gamete generation cellular developmental process cell differentiation cellular process cell motility	cellular anatomical structure intracellular anatomical structure cytoplasm intracellular organelle cytoskeleton organelle membraneless organelle intracellular membraneless organelle membrane-bounded organelle cell projection cilium motile cilium plasma membrane bounded cell projection
G	Kinase domain protein	small GTPase binding protein binding binding enzyme binding GTPase binding GTPase regulator activity enzyme regulator activity enzyme activator activity GTPase activator activity molecular function activator activity nucleoside-triphosphatase regulator activity molecular function regulator activity	localization cellular localization nucleocytoplasmic transport transport nuclear transport establishment of localization in cell intracellular transport cellular process establishment of localization	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol perinuclear region of cytoplasm membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle
F	Flagellar associated protein	-	-	membrane-bounded organelle cell projection cellular anatomical structure organelle cilium motile cilium plasma membrane bounded cell projection
E	Growth-arrest-specific microtubule-binding protein	small GTPase binding protein binding binding enzyme binding GTPase binding cytoskeletal protein binding microtubule binding tubulin binding	cellular process cell motility	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure Golgi apparatus organelle cytoplasm intracellular membrane-bounded organelle endomembrane system cell projection cilium motile cilium plasma membrane bounded cell projection polymeric cytoskeletal fiber membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure Golgi apparatus organelle cytoplasm intracellular membrane-bounded organelle endomembrane system cell projection cilium motile cilium plasma membrane bounded cell projection polymeric cytoskeletal fiber intracellular membraneless organelle cytoskeleton membraneless organelle supramolecular fiber microtubule supramolecular polymer supramolecular complex microtubule cytoskeleton
D	Growth-arrest-specific microtubule-binding protein	small GTPase binding protein binding binding enzyme binding GTPase binding cytoskeletal protein binding microtubule binding tubulin binding	cellular process cell motility	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure Golgi apparatus organelle cytoplasm intracellular membrane-bounded organelle endomembrane system cell projection cilium motile cilium plasma membrane bounded cell projection polymeric cytoskeletal fiber membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure Golgi apparatus organelle cytoplasm intracellular membrane-bounded organelle endomembrane system cell projection cilium motile cilium plasma membrane bounded cell projection polymeric cytoskeletal fiber intracellular membraneless organelle cytoskeleton membraneless organelle supramolecular fiber microtubule supramolecular polymer supramolecular complex microtubule cytoskeleton
C	LRRC48 protein	-	-	cellular anatomical structure intracellular anatomical structure cytoplasm intracellular organelle cytoskeleton organelle membraneless organelle intracellular membraneless organelle membrane-bounded organelle cell projection cilium motile cilium plasma membrane bounded cell projection
B	Coiled-coil protein, putative	-	organelle assembly plasma membrane bounded cell projection organization axonemal dynein complex assembly protein-containing complex organization cell projection organization microtubule cytoskeleton organization plasma membrane bounded cell projection assembly cellular component organization cellular component biogenesis microtubule bundle formation organelle organization cellular component assembly protein-containing complex assembly cilium assembly organelle assembly plasma membrane bounded cell projection organization axonemal dynein complex assembly protein-containing complex organization cell projection organization microtubule cytoskeleton organization plasma membrane bounded cell projection assembly cellular component organization cellular component biogenesis microtubule bundle formation organelle organization cellular component assembly protein-containing complex assembly cilium assembly cellular process microtubule-based process cellular component organization or biogenesis axoneme assembly cytoskeleton organization cilium organization cell projection assembly regulation of biological process regulation of cilium movement regulation of cellular process regulation of microtubule-based process biological regulation microtubule-based movement regulation of microtubule-based movement cilium movement cilium-dependent cell motility cell motility cilium or flagellum-dependent cell motility	membrane-bounded organelle cell projection cellular anatomical structure organelle cilium motile cilium plasma membrane bounded cell projection protein-containing complex intracellular anatomical structure catalytic complex axoneme ciliary plasm axonemal dynein complex dynein complex membrane-bounded organelle cell projection cellular anatomical structure organelle cilium motile cilium plasma membrane bounded cell projection protein-containing complex intracellular anatomical structure catalytic complex axoneme ciliary plasm axonemal dynein complex dynein complex intracellular membraneless organelle cytoplasmic region plasma membrane bounded cell projection cytoplasm intracellular organelle cytoskeleton membraneless organelle microtubule associated complex cytoplasm microtubule cytoskeleton
P [auth S], R [auth s]	Coiled-coil domain-containing protein 153	-	-	cellular anatomical structure intracellular anatomical structure cytoplasm intracellular organelle cytoskeleton organelle membraneless organelle intracellular membraneless organelle membrane-bounded organelle cell projection cilium motile cilium plasma membrane bounded cell projection
N [auth Q], O [auth R]	Calmodulin 7-2	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding	-	protein-containing complex intracellular anatomical structure intracellular membraneless organelle actin cytoskeleton myosin complex intracellular organelle cellular anatomical structure cytoskeleton organelle membraneless organelle myosin II complex
M [auth P]	DUF4201 domain-containing protein	-	organelle assembly plasma membrane bounded cell projection organization cell projection organization plasma membrane bounded cell projection assembly cellular component biogenesis cellular component organization organelle organization cellular component assembly cilium assembly cellular process cellular component organization or biogenesis cilium organization cell projection assembly	membrane-bounded organelle intracellular anatomical structure axoneme ciliary plasm cilium intracellular membraneless organelle cytoplasmic region plasma membrane bounded cell projection cytoplasm plasma membrane bounded cell projection intracellular organelle cell projection cellular anatomical structure cytoskeleton organelle membrane-bounded organelle intracellular anatomical structure axoneme ciliary plasm cilium intracellular membraneless organelle cytoplasmic region plasma membrane bounded cell projection cytoplasm plasma membrane bounded cell projection intracellular organelle cell projection cellular anatomical structure cytoskeleton organelle membraneless organelle cytoplasm ciliary basal body microtubule organizing center microtubule cytoskeleton
L	AAA family ATPase CDC48 subfamily protein	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity	-	-
K	Dynein regulatory complex protein 10	-	-	cellular anatomical structure intracellular anatomical structure cytoplasm intracellular organelle cytoskeleton organelle membraneless organelle intracellular membraneless organelle membrane-bounded organelle cell projection cilium motile cilium plasma membrane bounded cell projection
J	Dynein regulatory complex protein 9	-	cellular component organization organelle organization plasma membrane bounded cell projection organization cell projection organization cellular process cellular component organization or biogenesis cilium organization	cellular anatomical structure intracellular anatomical structure cytoplasm intracellular organelle cytoskeleton organelle membraneless organelle intracellular membraneless organelle membrane-bounded organelle cell projection cilium motile cilium plasma membrane bounded cell projection
A	Dynein regulatory complex protein 1/2 N-terminal domain-containing protein	-	organelle assembly plasma membrane bounded cell projection organization axonemal dynein complex assembly protein-containing complex organization cell projection organization microtubule cytoskeleton organization plasma membrane bounded cell projection assembly cellular component organization cellular component biogenesis microtubule bundle formation organelle organization cellular component assembly protein-containing complex assembly cilium assembly organelle assembly plasma membrane bounded cell projection organization axonemal dynein complex assembly protein-containing complex organization cell projection organization microtubule cytoskeleton organization plasma membrane bounded cell projection assembly cellular component organization cellular component biogenesis microtubule bundle formation organelle organization cellular component assembly protein-containing complex assembly cilium assembly cellular process microtubule-based process cellular component organization or biogenesis axoneme assembly cytoskeleton organization cilium organization cell projection assembly regulation of biological process regulation of cilium movement regulation of cellular process regulation of microtubule-based process biological regulation microtubule-based movement regulation of microtubule-based movement cilium movement cilium-dependent cell motility cell motility cilium or flagellum-dependent cell motility	membrane-bounded organelle protein-containing complex intracellular anatomical structure catalytic complex axoneme ciliary plasm axonemal dynein complex dynein complex intracellular membraneless organelle cilium cytoplasmic region plasma membrane bounded cell projection cytoplasm plasma membrane bounded cell projection intracellular organelle membrane-bounded organelle protein-containing complex intracellular anatomical structure catalytic complex axoneme ciliary plasm axonemal dynein complex dynein complex intracellular membraneless organelle cilium cytoplasmic region plasma membrane bounded cell projection cytoplasm plasma membrane bounded cell projection intracellular organelle cell projection cellular anatomical structure cytoskeleton organelle membraneless organelle microtubule associated complex cytoplasm microtubule cytoskeleton

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
I, Q [auth i]	IPR002048	EF-hand domain	Domain
I, Q [auth i]	IPR011992	EF-hand domain pair	Homologous Superfamily
H	IPR056291	Dynein regulatory complex subunit 7, MORN domain	Domain
H	IPR056290	CEP76/DRC7, peptidase-like domain	Domain
H	IPR038765	Papain-like cysteine peptidase superfamily	Homologous Superfamily
H	IPR033551	Dynein regulatory complex subunit 7	Family
H	IPR056292	Dynein regulatory complex subunit 7, C-terminal	Domain
G	IPR032675	Leucine-rich repeat domain superfamily	Homologous Superfamily
G	IPR001611	Leucine-rich repeat	Repeat
G	IPR027038	Ran GTPase-activating protein	Family
F	IPR052201	Leucine-rich repeat-containing regulator of pluripotency	Family
F	IPR032675	Leucine-rich repeat domain superfamily	Homologous Superfamily
F	IPR001611	Leucine-rich repeat	Repeat
E	IPR039308	Growth arrest-specific protein 8	Family
E	IPR025593	Growth arrest-specific protein 8 domain	Domain
D	IPR039308	Growth arrest-specific protein 8	Family
D	IPR025593	Growth arrest-specific protein 8 domain	Domain
C	IPR025875	Leucine rich repeat 4	Repeat
C	IPR032675	Leucine-rich repeat domain superfamily	Homologous Superfamily
C	IPR001611	Leucine-rich repeat	Repeat
C	IPR050576	Ciliary and flagellar integrity-associated protein	Family
B	IPR039505	Dynein regulatory complex protein 1/2, N-terminal	Domain
B	IPR039750	Dynein regulatory complex protein	Family
P [auth S], R [auth s]	IPR033585	Dynein regulatory complex protein 12-like	Family
N [auth Q], O [auth R]	IPR050230	Calmodulin/Myosin light chain/Troponin C-like	Family
N [auth Q], O [auth R]	IPR018247	EF-Hand 1, calcium-binding site	Binding Site
N [auth Q], O [auth R]	IPR002048	EF-hand domain	Domain
N [auth Q], O [auth R]	IPR011992	EF-hand domain pair	Homologous Superfamily
M [auth P]	IPR056294	CFAP184, CAP-like domain	Domain
M [auth P]	IPR025254	CCDC113/CCDC96, coiled-coil	Domain
M [auth P]	IPR035940	CAP superfamily	Homologous Superfamily
M [auth P]	IPR051885	Coiled-coil domain-containing protein involved in ciliogenesis	Family
M [auth P]	IPR056295	CFAP184, CBM-like domain	Domain
L	IPR003959	ATPase, AAA-type, core	Domain
L	IPR052267	Nexin-Dynein Regulatory Complex Component	Family
L	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
K	IPR042815	Dynein regulatory complex protein 10	Family
J	IPR042618	Dynein regulatory complex protein 9	Family
A	IPR039505	Dynein regulatory complex protein 1/2, N-terminal	Domain
A	IPR039750	Dynein regulatory complex protein	Family