Annotations: 8SZM

Crystal structure of E. coli ClpP protease in complex with phosphine oxide compound ACP6-12

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Z	e8szmZ1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
Y	e8szmY1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
X	e8szmX1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
W	e8szmW1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
V	e8szmV1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
U	e8szmU1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
T	e8szmT1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
S	e8szmS1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
R	e8szmR1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
Q	e8szmQ1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
P	e8szmP1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
O	e8szmO1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
N [auth G]	e8szmG1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
M [auth F]	e8szmF1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
L [auth E]	e8szmE1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
K [auth D]	e8szmD1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
J [auth C]	e8szmC1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
I [auth B]	e8szmB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
H [auth A]	e8szmA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
G [auth N]	e8szmN1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
F [auth M]	e8szmM1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
E [auth L]	e8szmL1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
D [auth K]	e8szmK1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
C [auth J]	e8szmJ1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
BA [auth b]	e8szmb1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
B [auth I]	e8szmI1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
AA [auth a]	e8szma1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)
A [auth H]	e8szmH1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F:	ECOD (v295)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth H], AA [auth a], B [auth I], BA [auth b], C [auth J], A [auth H], AA [auth a], B [auth I], BA [auth b], C [auth J], D [auth K], E [auth L], F [auth M], G [auth N], H [auth A], I [auth B], J [auth C], K [auth D], L [auth E], M [auth F], N [auth G], O, P, Q, R, S, T, U, V, W, X, Y, Z	ATP-dependent Clp protease proteolytic subunit	peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity ATP-dependent peptidase activity ATP-dependent activity transferase activity ATPase binding protein binding binding peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity ATP-dependent peptidase activity ATP-dependent activity transferase activity ATPase binding protein binding binding enzyme binding	catabolic process metabolic process cellular process primary metabolic process protein catabolic process protein metabolic process macromolecule metabolic process protein quality control for misfolded or incompletely synthesized proteins macromolecule catabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm endopeptidase Clp complex protein-containing complex catalytic complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth H], AA [auth a], B [auth I], BA [auth b], C [auth J], A [auth H], AA [auth a], B [auth I], BA [auth b], C [auth J], D [auth K], E [auth L], F [auth M], G [auth N], H [auth A], I [auth B], J [auth C], K [auth D], L [auth E], M [auth F], N [auth G], O, P, Q, R, S, T, U, V, W, X, Y, Z	IPR029045	ClpP/crotonase-like domain superfamily	Homologous Superfamily
A [auth H], AA [auth a], B [auth I], BA [auth b], C [auth J], A [auth H], AA [auth a], B [auth I], BA [auth b], C [auth J], D [auth K], E [auth L], F [auth M], G [auth N], H [auth A], I [auth B], J [auth C], K [auth D], L [auth E], M [auth F], N [auth G], O, P, Q, R, S, T, U, V, W, X, Y, Z	IPR001907	ATP-dependent Clp protease proteolytic subunit	Family
A [auth H], AA [auth a], B [auth I], BA [auth b], C [auth J], A [auth H], AA [auth a], B [auth I], BA [auth b], C [auth J], D [auth K], E [auth L], F [auth M], G [auth N], H [auth A], I [auth B], J [auth C], K [auth D], L [auth E], M [auth F], N [auth G], O, P, Q, R, S, T, U, V, W, X, Y, Z	IPR018215	ClpP, Ser active site	Active Site
A [auth H], AA [auth a], B [auth I], BA [auth b], C [auth J], A [auth H], AA [auth a], B [auth I], BA [auth b], C [auth J], D [auth K], E [auth L], F [auth M], G [auth N], H [auth A], I [auth B], J [auth C], K [auth D], L [auth E], M [auth F], N [auth G], O, P, Q, R, S, T, U, V, W, X, Y, Z	IPR033135	ClpP, histidine active site	Active Site
A [auth H], AA [auth a], B [auth I], BA [auth b], C [auth J], A [auth H], AA [auth a], B [auth I], BA [auth b], C [auth J], D [auth K], E [auth L], F [auth M], G [auth N], H [auth A], I [auth B], J [auth C], K [auth D], L [auth E], M [auth F], N [auth G], O, P, Q, R, S, T, U, V, W, X, Y, Z	IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

8SZM | pdb_00008szm

Crystal structure of E. coli ClpP protease in complex with phosphine oxide compound ACP6-12

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage