8SZA | pdb_00008sza

Cryo-EM Structure of NINJ1 Filament at 2.75 Angstrom Resolution

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Membrane Protein Annotation: PDBTM

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Ninjurin-1	membrane destabilizing activity binding lipid binding lipopolysaccharide binding carbohydrate derivative binding cell adhesion molecule binding protein binding cell adhesion mediator activity	ferroptosis cellular process cell death programmed cell death cellular response to stimulus positive regulation of cell communication positive regulation of response to biotic stimulus immune response-regulating cell surface receptor signaling pathway regulation of cellular process positive regulation of signal transduction response to stimulus pattern recognition receptor signaling pathway regulation of signal transduction response to biotic stimulus ferroptosis cellular process cell death programmed cell death cellular response to stimulus positive regulation of cell communication positive regulation of response to biotic stimulus immune response-regulating cell surface receptor signaling pathway regulation of cellular process positive regulation of signal transduction response to stimulus pattern recognition receptor signaling pathway regulation of signal transduction response to biotic stimulus cell communication immune response-activating signaling pathway positive regulation of immune response regulation of immune system process signal transduction positive regulation of immune system process cell surface toll-like receptor signaling pathway innate immune response-activating signaling pathway regulation of biological process positive regulation of pattern recognition receptor signaling pathway immune response response to other organism immune response-activating cell surface receptor signaling pathway regulation of innate immune response response to external stimulus regulation of toll-like receptor 4 signaling pathway positive regulation of toll-like receptor 4 signaling pathway regulation of response to stimulus defense response to other organism regulation of pattern recognition receptor signaling pathway positive regulation of defense response activation of innate immune response regulation of immune response activation of immune response regulation of defense response regulation of response to biotic stimulus biological process involved in interspecies interaction between organisms regulation of response to external stimulus signaling positive regulation of biological process innate immune response activating cell surface receptor signaling pathway positive regulation of response to stimulus positive regulation of response to external stimulus immune response-regulating signaling pathway regulation of response to stress response to stress innate immune response response to external biotic stimulus positive regulation of cellular process cell surface pattern recognition receptor signaling pathway regulation of signaling positive regulation of innate immune response cell surface receptor signaling pathway defense response biological regulation defense response to symbiont immune system process toll-like receptor 4 signaling pathway regulation of cell communication positive regulation of signaling regulation of inflammatory response positive regulation of inflammatory response inflammatory response developmental process multicellular organismal process blood vessel morphogenesis tube development angiogenesis vasculature development circulatory system development anatomical structure morphogenesis multicellular organism development tube morphogenesis anatomical structure formation involved in morphogenesis anatomical structure development blood vessel development system development nervous system development regulation of developmental process regulation of vasculature development positive regulation of developmental process regulation of multicellular organismal process regulation of anatomical structure morphogenesis regulation of multicellular organismal development positive regulation of angiogenesis positive regulation of vasculature development regulation of angiogenesis positive regulation of multicellular organismal process programmed necrotic cell death cell chemotaxis leukocyte chemotaxis involved in inflammatory response chemotaxis leukocyte migration involved in inflammatory response leukocyte migration cellular response to chemical stimulus taxis response to chemical cell migration cell motility leukocyte chemotaxis locomotion cell adhesion cytolysis pyroptotic cell death pyroptotic inflammatory response muscle structure development cellular developmental process cell differentiation muscle cell differentiation disruption of cell in another organism disruption of anatomical structure in another organism killing of cells of another organism cell killing tissue regeneration developmental growth growth regeneration heterotypic cell-cell adhesion cell-cell adhesion cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein complex oligomerization protein-containing complex assembly protein homooligomerization cellular component organization or biogenesis response to osmotic stress cellular response to chemical stress cellular response to osmotic stress cellular response to environmental stimulus hyperosmotic response cellular hyperosmotic response cellular response to stress response to abiotic stimulus cellular response to abiotic stimulus	cell periphery cellular anatomical structure membrane plasma membrane synapse cell junction plasma membrane region synaptic membrane extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR007007	Ninjurin	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D, E A, B, C, D, E, F	Pharos: Q92982	allergic contact dermatitis gastric carcinoma MALT lymphoma astrocytic tumor glioblastoma subependymal giant cell astrocytoma gastric cancer large cell medulloblastoma tuberculosis

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, B, C, D, E A, B, C, D, E, F	PDBTM	Annotated as membrane protein by PDBTM

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.