8SPS
High resolution structure of ESRRB nucleosome bound OCT4 at site a and site b
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C [auth L] | SCOP2B Superfamily | lambda C1 repressor DNA-binding domain-like | 8094725 | 3000119 | SCOP2B (2022-06-29) |
D [auth A] | SCOP2B Superfamily | Core histone-like | 8039340 | 3001387 | SCOP2B (2022-06-29) |
H [auth E] | SCOP2B Superfamily | Core histone-like | 8039340 | 3001387 | SCOP2B (2022-06-29) |
E [auth B] | SCOP2B Superfamily | Core histone-like | 8070545 | 3001387 | SCOP2B (2022-06-29) |
I [auth F] | SCOP2B Superfamily | Core histone-like | 8070545 | 3001387 | SCOP2B (2022-06-29) |
J [auth G] | SCOP2B Superfamily | Core histone-like | 8099192 | 3001387 | SCOP2B (2022-06-29) |
F [auth C] | SCOP2B Superfamily | Core histone-like | 8099192 | 3001387 | SCOP2B (2022-06-29) |
G [auth D] | SCOP2B Superfamily | Core histone-like | 8066283 | 3001387 | SCOP2B (2022-06-29) |
K [auth H] | SCOP2B Superfamily | Core histone-like | 8066283 | 3001387 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth L] | PF00157 | e8spsL1 | A: alpha arrays | X: HTH | H: HTH | T: tetra-helical, lambda repressor-like | F: PF00157 | ECOD (1.6) |
N [auth M] | PF00046 | e8spsM1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: PF00046 | ECOD (1.6) |
D [auth A] | PF00125 | e8spsA1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125 | ECOD (1.6) |
H [auth E] | PF00125 | e8spsE1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125 | ECOD (1.6) |
E [auth B] | PF15511 | e8spsB1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF15511 | ECOD (1.6) |
I [auth F] | PF15511 | e8spsF1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF15511 | ECOD (1.6) |
J [auth G] | PF00125,PF16211 | e8spsG1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125,PF16211 | ECOD (1.6) |
F [auth C] | PF00125,PF16211 | e8spsC1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125,PF16211 | ECOD (1.6) |
G [auth D] | PF00125 | e8spsD1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125 | ECOD (1.6) |
K [auth H] | PF00125 | e8spsH1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125 | ECOD (1.6) |
L [auth K] | PF07686 | e8spsK1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
M [auth N] | PF07686 | e8spsN1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
C [auth L], N [auth M] | PF00046 | Homeodomain (Homeodomain) | Homeodomain | - | Domain |
C [auth L], N [auth M] | PF00157 | Pou domain - N-terminal to homeobox domain (Pou) | Pou domain - N-terminal to homeobox domain | - | Domain |
D [auth A], H [auth E] | PF00125 | Core histone H2A/H2B/H3/H4 (Histone) | Core histone H2A/H2B/H3/H4 | - | Domain |
E [auth B], I [auth F] | PF15511 | Centromere kinetochore component CENP-T histone fold (CENP-T_C) | Centromere kinetochore component CENP-T histone fold | CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly asso ... | Domain |
F [auth C], J [auth G] | PF16211 | C-terminus of histone H2A (Histone_H2A_C) | C-terminus of histone H2A | - | Family |
F [auth C], J [auth G] | PF00125 | Core histone H2A/H2B/H3/H4 (Histone) | Core histone H2A/H2B/H3/H4 | - | Domain |
G [auth D], K [auth H] | PF00125 | Core histone H2A/H2B/H3/H4 (Histone) | Core histone H2A/H2B/H3/H4 | - | Domain |