8SM5 | pdb_00008sm5

Crystal Structure of BHRF1 from Epstein Barr Virus in complex with BID BH3 peptide

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
I	SCOP2B Superfamily	Bcl-2-like inhibitors of programmed cell death	8039755	3001974	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Bcl-2-like inhibitors of programmed cell death	8039755	3001974	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Bcl-2-like inhibitors of programmed cell death	8039755	3001974	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Bcl-2-like inhibitors of programmed cell death	8039755	3001974	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Bcl-2-like inhibitors of programmed cell death	8039755	3001974	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
I	zf-C2H2_16	e8sm5I1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: zf-C2H2_16	ECOD (v294.1)
G	zf-C2H2_16	e8sm5G1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: zf-C2H2_16	ECOD (v294.1)
E	zf-C2H2_16	e8sm5E1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: zf-C2H2_16	ECOD (v294.1)
C	zf-C2H2_16	e8sm5C1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: zf-C2H2_16	ECOD (v294.1)
A	Lipocalin	e8sm5A1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Lipocalin	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C, E, G, I	PF00452	Apoptosis regulator proteins, Bcl-2 family (Bcl-2)	Apoptosis regulator proteins, Bcl-2 family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C, E, G, I	Apoptosis regulator BHRF1	-	cellular response to stimulus regulation of cellular component organization regulation of cellular process response to stimulus signaling negative regulation of signaling apoptotic mitochondrial changes negative regulation of biological process regulation of signal transduction regulation of release of cytochrome c from mitochondria regulation of programmed cell death negative regulation of cell communication cell communication cellular component organization negative regulation of release of cytochrome c from mitochondria cellular response to stimulus regulation of cellular component organization regulation of cellular process response to stimulus signaling negative regulation of signaling apoptotic mitochondrial changes negative regulation of biological process regulation of signal transduction regulation of release of cytochrome c from mitochondria regulation of programmed cell death negative regulation of cell communication cell communication cellular component organization negative regulation of release of cytochrome c from mitochondria negative regulation of apoptotic signaling pathway negative regulation of cellular process cellular component organization or biogenesis signal transduction mitochondrion organization regulation of biological process regulation of signaling negative regulation of cellular component organization negative regulation of response to stimulus negative regulation of programmed cell death regulation of apoptotic process biological regulation cell death negative regulation of signal transduction regulation of organelle organization apoptotic signaling pathway organelle organization release of cytochrome c from mitochondria negative regulation of apoptotic process negative regulation of organelle organization regulation of response to stimulus regulation of mitochondrion organization regulation of cell communication cellular process apoptotic process programmed cell death regulation of apoptotic signaling pathway symbiont-mediated perturbation of host cellular process symbiont-mediated suppression of host apoptosis biological process involved in interspecies interaction between organisms symbiont-mediated perturbation of host programmed cell death symbiont-mediated perturbation of host process symbiont-mediated suppression of host programmed cell death symbiont-mediated perturbation of host apoptosis modulation of process of another organism biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated suppression of host autophagy symbiont-mediated perturbation of host autophagy	host cellular component cellular anatomical structure host cell part host cell membrane other organism part host intracellular membrane-bounded organelle host intracellular part host cell mitochondrion host cell cytoplasm part host intracellular organelle host cell cytoplasm host intracellular region
B, D, F, H, J	BID BH3	enzyme regulator activity molecular function regulator activity cysteine-type endopeptidase regulator activity involved in apoptotic process protein binding binding signaling receptor binding cytokine receptor binding tumor necrosis factor receptor superfamily binding death receptor binding ubiquitin protein ligase binding ubiquitin-like protein ligase binding enzyme binding	cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process cellular component organization or biogenesis organelle organization apoptotic mitochondrial changes apoptotic process cell death programmed cell death mitochondrion organization cellular response to stimulus cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process cellular component organization or biogenesis organelle organization apoptotic mitochondrial changes apoptotic process cell death programmed cell death mitochondrion organization cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus signaling biological regulation intracellular signal transduction cell communication cellular response to stress DNA damage response response to stress signal transduction in response to DNA damage signal transduction multicellular organismal process regulation of leukocyte activation regulation of cell activation lymphocyte activation leukocyte proliferation leukocyte activation T cell activation lymphocyte proliferation regulation of immune system process regulation of multicellular organismal process T cell proliferation regulation of lymphocyte proliferation regulation of leukocyte proliferation cell population proliferation cell activation regulation of T cell activation regulation of T cell proliferation regulation of cell population proliferation mononuclear cell proliferation immune system process regulation of mononuclear cell proliferation regulation of lymphocyte activation positive regulation of organelle organization regulation of cellular component organization positive regulation of cellular component organization positive regulation of biological process regulation of release of cytochrome c from mitochondria positive regulation of release of cytochrome c from mitochondria positive regulation of cellular process regulation of organelle organization apoptotic signaling pathway release of cytochrome c from mitochondria regulation of mitochondrion organization positive regulation of cellular component biogenesis regulation of cellular component biogenesis positive regulation of protein-containing complex assembly regulation of protein-containing complex assembly positive regulation of programmed cell death regulation of apoptotic process regulation of programmed cell death positive regulation of apoptotic process positive regulation of cell communication positive regulation of signal transduction regulation of signal transduction extrinsic apoptotic signaling pathway positive regulation of apoptotic signaling pathway positive regulation of response to stimulus regulation of signaling cell surface receptor signaling pathway positive regulation of extrinsic apoptotic signaling pathway regulation of extrinsic apoptotic signaling pathway regulation of response to stimulus regulation of cell communication regulation of apoptotic signaling pathway positive regulation of signaling regulation of mitochondrial membrane potential positive regulation of mitochondrial membrane potential regulation of biological quality positive regulation of membrane potential regulation of membrane potential extrinsic apoptotic signaling pathway via death domain receptors fibroblast apoptotic process positive regulation of fibroblast apoptotic process regulation of fibroblast apoptotic process regulation of epithelial cell proliferation epithelial cell proliferation hepatocyte apoptotic process epithelial cell apoptotic process neuron apoptotic process regulation of intrinsic apoptotic signaling pathway regulation of intracellular signal transduction intrinsic apoptotic signaling pathway positive regulation of intracellular signal transduction positive regulation of intrinsic apoptotic signaling pathway aerobic respiration cellular respiration oxidative phosphorylation energy derivation by oxidation of organic compounds ATP synthesis coupled electron transport electron transport chain generation of precursor metabolites and energy respiratory electron transport chain metabolic process mitochondrial ATP synthesis coupled electron transport localization establishment of protein localization cellular localization establishment of protein localization to membrane localization within membrane establishment of localization supramolecular fiber organization mitochondrial outer membrane permeabilization involved in programmed cell death positive regulation of mitochondrial membrane permeability involved in apoptotic process positive regulation of mitochondrial membrane permeability positive regulation of membrane permeability regulation of mitochondrial membrane permeability regulation of membrane permeability regulation of mitochondrial membrane permeability involved in apoptotic process mitochondrial outer membrane permeabilization negative regulation of signaling negative regulation of intracellular signal transduction negative regulation of biological process regulation of cellular response to stress regulation of intrinsic apoptotic signaling pathway in response to DNA damage negative regulation of cell communication negative regulation of apoptotic signaling pathway regulation of response to stress negative regulation of cellular process intrinsic apoptotic signaling pathway in response to DNA damage negative regulation of response to stimulus negative regulation of programmed cell death negative regulation of signal transduction negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage negative regulation of intrinsic apoptotic signaling pathway negative regulation of apoptotic process regulation of cell cycle phase transition regulation of cell cycle process cell cycle phase transition regulation of cell cycle G1/S phase transition cell cycle G1/S phase transition mitotic cell cycle regulation of mitotic cell cycle phase transition regulation of mitotic cell cycle regulation of G1/S transition of mitotic cell cycle mitotic cell cycle process cell cycle regulation of cell cycle G1/S transition of mitotic cell cycle cell cycle process mitotic cell cycle phase transition	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle membrane cytosol mitochondrial membrane organelle outer membrane organelle envelope bounding membrane of organelle membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle membrane cytosol mitochondrial membrane organelle outer membrane organelle envelope bounding membrane of organelle mitochondrial envelope mitochondrial outer membrane outer membrane organelle membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C, E, G, I	IPR020726	Apoptosis regulator, Bcl-2, BH2 motif, conserved site	Conserved Site
A, C, E, G, I	IPR036834	Bcl-2-like superfamily	Homologous Superfamily
A, C, E, G, I	IPR002475	Bcl2-like	Family
A, C, E, G, I	IPR046371	Bcl-2, Bcl-2 homology region 1-3	Domain
B, D, F, H, J	IPR036834	Bcl-2-like superfamily	Homologous Superfamily
B, D, F, H, J	IPR010479	BH3-interacting domain death agonist	Family
B, D, F, H, J	IPR020728	Apoptosis regulator, Bcl-2, BH3 motif, conserved site	Conserved Site

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B, D, F, H, J	Pharos: P55957	psoriasis atypical teratoid rhabdoid tumor breast carcinoma gastric cancer hepatocellular carcinoma lung cancer Malignant neoplasm of stomach oligodendroglioma schizophrenia B-cell chronic lymphocytic leukemia Crohn disease gastric carcinoma hereditary diffuse gastric adenocarcinoma malignant colon neoplasm malignant pancreatic neoplasm psoriasis atypical teratoid rhabdoid tumor breast carcinoma gastric cancer hepatocellular carcinoma lung cancer Malignant neoplasm of stomach oligodendroglioma schizophrenia B-cell chronic lymphocytic leukemia Crohn disease gastric carcinoma hereditary diffuse gastric adenocarcinoma malignant colon neoplasm malignant pancreatic neoplasm ovarian cancer tuberculosis bipolar disorder esophageal adenocarcinoma gastric neoplasm malignant mesothelioma medulloblastoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.