Annotations: 8S7G

Cryo-EM structure of Pseudomonas aeruginosa Recombinase A (RecA) in complex with LexAS125A mutant

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Ldl_recept_b	e8s7gA01	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Ldl_recept_b	ECOD (v295.2)
B	Rap1-DNA-bind	e8s7gB1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Rap1-DNA-bind	ECOD (v295.2)
C [auth D]	Ldl_recept_b	e8s7gD01	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Ldl_recept_b	ECOD (v295.2)
D [auth E]	Rap1-DNA-bind	e8s7gE1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Rap1-DNA-bind	ECOD (v295.2)
E [auth F]	Rap1-DNA-bind	e8s7gF1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Rap1-DNA-bind	ECOD (v295.2)
F [auth G]	Rap1-DNA-bind	e8s7gG1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Rap1-DNA-bind	ECOD (v295.2)
G [auth H]	Rap1-DNA-bind	e8s7gH1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Rap1-DNA-bind	ECOD (v295.2)
H [auth I]	Rap1-DNA-bind	e8s7gI1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Rap1-DNA-bind	ECOD (v295.2)
I [auth J]	Rap1-DNA-bind	e8s7gJ1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Rap1-DNA-bind	ECOD (v295.2)
J [auth K]	Rap1-DNA-bind	e8s7gK1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Rap1-DNA-bind	ECOD (v295.2)
K [auth L]	Rap1-DNA-bind	e8s7gL1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Rap1-DNA-bind	ECOD (v295.2)
M [auth C]	Rap1-DNA-bind	e8s7gC1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Rap1-DNA-bind	ECOD (v295.2)
N [auth M]	Rap1-DNA-bind	e8s7gM1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Rap1-DNA-bind	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00717	Peptidase S24-like (Peptidase_S24)	Peptidase S24-like		Domain
C [auth D], D [auth E], E [auth F], F [auth G], G [auth H], C [auth D], D [auth E], E [auth F], F [auth G], G [auth H], H [auth I], I [auth J], J [auth K], K [auth L], M [auth C], N [auth M]	PF21096	RecA C-terminal domain (RecA_C)	RecA C-terminal domain	This entry represents a small domain found at the C-terminus of RecA. The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response This domain adopts a structure compose ...	This entry represents a small domain found at the C-terminus of RecA. The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response This domain adopts a structure composed of a beta hairpin and three alpha helices. It has been shown to bind to dsDNA [1].	Domain
C [auth D], D [auth E], E [auth F], F [auth G], G [auth H], C [auth D], D [auth E], E [auth F], F [auth G], G [auth H], H [auth I], I [auth J], J [auth K], K [auth L], M [auth C], N [auth M]	PF00154	RecA N-terminal domain (RecA_N)	RecA N-terminal domain	This entry represents the N-terminal of RecA protein. RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyses an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by h ...	This entry represents the N-terminal of RecA protein. RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyses an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	LexA repressor	peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity sequence-specific DNA binding DNA binding binding nucleic acid binding transcription regulator activity DNA-binding transcription repressor activity peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity sequence-specific DNA binding DNA binding binding nucleic acid binding transcription regulator activity DNA-binding transcription repressor activity DNA-binding transcription factor activity	regulation of cellular process negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of cellular process negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process negative regulation of DNA-templated transcription regulation of biological process negative regulation of metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process metabolic process cellular process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA metabolic process DNA replication DNA metabolic process cellular response to stimulus response to stimulus cellular response to stress DNA damage response response to stress DNA repair SOS response proteolysis protein metabolic process	protein-containing complex protein-DNA complex
C [auth D], D [auth E], E [auth F], F [auth G], G [auth H], C [auth D], D [auth E], E [auth F], F [auth G], G [auth H], H [auth I], I [auth J], J [auth K], K [auth L], M [auth C], N [auth M]	Protein RecA	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding DNA endonuclease activity endonuclease activity catalytic activity, acting on DNA nuclease activity catalytic activity, acting on a nucleic acid catalytic activity DNA nuclease activity DNA binding damaged DNA binding nucleic acid binding DNA strand exchange activity single-stranded DNA binding ATP-dependent activity, acting on DNA DNA damage sensor activity molecular sensor activity ATP-dependent DNA damage sensor activity molecular function regulator activity ATP-dependent activity	cellular response to stimulus response to stimulus DNA recombination primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular response to stress DNA damage response response to stress recombinational repair metabolic process cellular process macromolecule metabolic process cellular response to stimulus response to stimulus DNA recombination primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular response to stress DNA damage response response to stress recombinational repair metabolic process cellular process macromolecule metabolic process DNA repair SOS response	cellular anatomical structure intracellular anatomical structure cytoplasm transferase complex, transferring phosphorus-containing groups DNA polymerase V complex protein-containing complex catalytic complex transferase complex DNA polymerase complex intracellular protein-containing complex
L [auth T]	DNA (36-MER)	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR015927	Peptidase S24/S26A/S26B/S26C	Domain
A, B	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
A, B	IPR050077	LexA repressor	Family
A, B	IPR036390	Winged helix DNA-binding domain superfamily	Homologous Superfamily
A, B	IPR006199	LexA repressor, DNA-binding domain	Domain
A, B	IPR039418	LexA-like	Domain
A, B	IPR006200	Transcription regulator LexA	Family
A, B	IPR036286	LexA/Signal peptidase-like superfamily	Homologous Superfamily
A, B	IPR006197	Peptidase S24, LexA-like	Family
C [auth D], D [auth E], E [auth F], F [auth G], G [auth H], C [auth D], D [auth E], E [auth F], F [auth G], G [auth H], H [auth I], I [auth J], J [auth K], K [auth L], M [auth C], N [auth M]	IPR049261	RecA-like, C-terminal	Domain
C [auth D], D [auth E], E [auth F], F [auth G], G [auth H], C [auth D], D [auth E], E [auth F], F [auth G], G [auth H], H [auth I], I [auth J], J [auth K], K [auth L], M [auth C], N [auth M]	IPR020588	DNA recombination and repair protein RecA-like, ATP-binding domain	Domain
C [auth D], D [auth E], E [auth F], F [auth G], G [auth H], C [auth D], D [auth E], E [auth F], F [auth G], G [auth H], H [auth I], I [auth J], J [auth K], K [auth L], M [auth C], N [auth M]	IPR020587	DNA recombination and repair protein RecA, monomer-monomer interface	Domain
C [auth D], D [auth E], E [auth F], F [auth G], G [auth H], C [auth D], D [auth E], E [auth F], F [auth G], G [auth H], H [auth I], I [auth J], J [auth K], K [auth L], M [auth C], N [auth M]	IPR003593	AAA+ ATPase domain	Domain
C [auth D], D [auth E], E [auth F], F [auth G], G [auth H], C [auth D], D [auth E], E [auth F], F [auth G], G [auth H], H [auth I], I [auth J], J [auth K], K [auth L], M [auth C], N [auth M]	IPR020584	DNA recombination/repair protein RecA, conserved site	Conserved Site
C [auth D], D [auth E], E [auth F], F [auth G], G [auth H], C [auth D], D [auth E], E [auth F], F [auth G], G [auth H], H [auth I], I [auth J], J [auth K], K [auth L], M [auth C], N [auth M]	IPR023400	DNA recombination and repair protein RecA, C-terminal, superfamily	Homologous Superfamily
C [auth D], D [auth E], E [auth F], F [auth G], G [auth H], C [auth D], D [auth E], E [auth F], F [auth G], G [auth H], H [auth I], I [auth J], J [auth K], K [auth L], M [auth C], N [auth M]	IPR049428	RecA-like, N-terminal	Domain
C [auth D], D [auth E], E [auth F], F [auth G], G [auth H], C [auth D], D [auth E], E [auth F], F [auth G], G [auth H], H [auth I], I [auth J], J [auth K], K [auth L], M [auth C], N [auth M]	IPR013765	DNA recombination and repair protein RecA	Family
C [auth D], D [auth E], E [auth F], F [auth G], G [auth H], C [auth D], D [auth E], E [auth F], F [auth G], G [auth H], H [auth I], I [auth J], J [auth K], K [auth L], M [auth C], N [auth M]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily