8RQE | pdb_00008rqe

Composite map of bacteriophage JBD30 capsid - neck complex

External Resource: Annotation

Domain Annotation: ECOD Classification
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
AGA [auth qA]	CoV_Methyltr_2	e8rqeqA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_Methyltr_2	ECOD (v295)
CGA [auth qC]	CoV_Methyltr_2	e8rqeqC1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_Methyltr_2	ECOD (v295)
EGA [auth qE]	CoV_Methyltr_2	e8rqeqE1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_Methyltr_2	ECOD (v295)
GGA [auth qG]	CoV_Methyltr_2	e8rqeqG1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_Methyltr_2	ECOD (v295)
IGA [auth qI]	CoV_Methyltr_2	e8rqeqI1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_Methyltr_2	ECOD (v295)
KGA [auth qK]	CoV_Methyltr_2	e8rqeqK1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_Methyltr_2	ECOD (v295)
MGA [auth qM]	CoV_Methyltr_2	e8rqeqM1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_Methyltr_2	ECOD (v295)
QFA [auth qq]	CoV_Methyltr_2	e8rqeqq1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_Methyltr_2	ECOD (v295)
SFA [auth qs]	CoV_Methyltr_2	e8rqeqs1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_Methyltr_2	ECOD (v295)
UFA [auth qu]	CoV_Methyltr_2	e8rqequ1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_Methyltr_2	ECOD (v295)
WFA [auth qw]	CoV_Methyltr_2	e8rqeqw1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_Methyltr_2	ECOD (v295)
YFA [auth qy]	CoV_Methyltr_2	e8rqeqy1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: CoV_Methyltr_2	ECOD (v295)

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
AGA [auth qA], CGA [auth qC], EGA [auth qE], GGA [auth qG], IGA [auth qI], AGA [auth qA], CGA [auth qC], EGA [auth qE], GGA [auth qG], IGA [auth qI], KGA [auth qK], MGA [auth qM], QFA [auth qq], SFA [auth qs], UFA [auth qu], WFA [auth qw], YFA [auth qy]	IPR009752	Bacteriophage Mu, Gene product J	Family
BGA [auth qB], DGA [auth qD], FGA [auth qF], HGA [auth qH], JGA [auth qJ], BGA [auth qB], DGA [auth qD], FGA [auth qF], HGA [auth qH], JGA [auth qJ], LGA [auth qL], PFA [auth qp], RFA [auth qr], TFA [auth qt], VFA [auth qv], XFA [auth qx], ZFA [auth qz]	IPR009279	Portal protein, Mu bacteriophage	Family
JFA [auth qj], KFA [auth qk], LFA [auth ql], MFA [auth qm], NFA [auth qn], JFA [auth qj], KFA [auth qk], LFA [auth ql], MFA [auth qm], NFA [auth qn], OFA [auth qo]	IPR016893	Protein of unknown function UCP028589	Family
DFA [auth qd], EFA [auth qe], FFA [auth qf], GFA [auth qg], HFA [auth qh], DFA [auth qd], EFA [auth qe], FFA [auth qf], GFA [auth qg], HFA [auth qh], IFA [auth qi]	IPR056912	Phage JBD30-like tail terminator protein-like	Family
AAA [auth nA], AB [auth ba], AC [auth bA], AD [auth ca], AE [auth cA], AAA [auth nA], AB [auth ba], AC [auth bA], AD [auth ca], AE [auth cA], AFA [auth qa], AI [auth eA], AJ [auth fa], AK [auth fA], AL [auth ga], AQ [auth iA], AR [auth ja], AS [auth jA], AT [auth ka], AY [auth mA], AZ [auth na], BAA [auth nB], BB [auth bb], BBA [auth ob], BC [auth bB], BD [auth cb], BE [auth cB], BFA [auth qb], BJ [auth fb], BK [auth fB], BL [auth gb], BR [auth jb], BS [auth jB], BT [auth kb], BU [auth kB], BY [auth mB], BZ [auth nb], CAA [auth nC], CBA [auth oc], CC [auth bC], CD [auth cc], CE [auth cC], CF [auth dc], CJ [auth fc], CK [auth fC], CL [auth gc], CM [auth gC], CR [auth jc], CS [auth jC], CT [auth kc], CU [auth kC], CZ [auth nc], DAA [auth nD], DBA [auth od], DC [auth bD], DCA [auth oD], DD [auth cd], DE [auth cD], DF [auth dd], DK [auth fD], DL [auth gd], DM [auth gD], DS [auth jD], DT [auth kd], DU [auth kD], DV [auth ld], DZ [auth nd], EAA [auth nE], EBA [auth oe], ECA [auth oE], ED [auth ce], EE [auth cE], EF [auth de], EG [auth dE], EK [auth fE], EL [auth ge], EM [auth gE], EN [auth he], ES [auth jE], ET [auth ke], EU [auth kE], EV [auth le], FAA [auth nF], FBA [auth of], FCA [auth oF], FDA [auth pf], FE [auth cF], FF [auth df], FG [auth dF], FL [auth gf], FM [auth gF], FN [auth hf], FO [auth hF], FT [auth kf], FU [auth kF], FV [auth lf], FW [auth lF], G [auth ag], GBA [auth og], GCA [auth oG], GDA [auth pg], GE [auth cG], GF [auth dg], GG [auth dG], GH [auth eg], GL [auth gg], GM [auth gG], GN [auth hg], GO [auth hG], GP [auth ig], GT [auth kg], GU [auth kG], GV [auth lg], GW [auth lG], H [auth ah], HA [auth aH], HBA [auth oh], HCA [auth oH], HDA [auth ph], HEA [auth pH], HF [auth dh], HG [auth dH], HH [auth eh], HM [auth gH], HN [auth hh], HO [auth hH], HP [auth ih], HU [auth kH], HV [auth lh], HW [auth lH], HX [auth mh], I [auth ai], IA [auth aI], ICA [auth oI], IDA [auth pi], IEA [auth pI], IF [auth di], IG [auth dI], IH [auth ei], II [auth eI], IM [auth gI], IN [auth hi], IO [auth hI], IP [auth ii], IQ [auth iI], IV [auth li], IW [auth lI], IX [auth mi], J [auth aj], JA [auth aJ], JB [auth bj], JCA [auth oJ], JDA [auth pj], JEA [auth pJ], JG [auth dJ], JH [auth ej], JI [auth eJ], JN [auth hj], JO [auth hJ], JP [auth ij], JQ [auth iJ], JV [auth lj], JW [auth lJ], JX [auth mj], JY [auth mJ], K [auth ak], KA [auth aK], KB [auth bk], KDA [auth pk], KEA [auth pK], KG [auth dK], KH [auth ek], KI [auth eK], KJ [auth fk], KN [auth hk], KO [auth hK], KP [auth ik], KQ [auth iK], KR [auth jk], KW [auth lK], KX [auth mk], KY [auth mK], L [auth al], LA [auth aL], LB [auth bl], LC [auth bL], LDA [auth pl], LEA [auth pL], LH [auth el], LI [auth eL], LJ [auth fl], LP [auth il], LQ [auth iL], LR [auth jl], LW [auth lL], LX [auth ml], LY [auth mL], LZ [auth nl], M [auth am], MA [auth aM], MB [auth bm], MC [auth bM], MD [auth cm], MEA [auth pM], MH [auth em], MI [auth eM], MJ [auth fm], MK [auth fM], MP [auth im], MQ [auth iM], MR [auth jm], MS [auth jM], MX [auth mm], MY [auth mM], MZ [auth nm], NA [auth aN], NAA [auth nN], NB [auth bn], NC [auth bN], ND [auth cn], NEA [auth pN], NI [auth eN], NJ [auth fn], NK [auth fN], NQ [auth iN], NR [auth jn], NS [auth jN], NX [auth mn], NY [auth mN], NZ [auth nn], OAA [auth nO], OB [auth bo], OC [auth bO], OD [auth co], OE [auth cO], OI [auth eO], OJ [auth fo], OK [auth fO], OL [auth go], OQ [auth iO], OR [auth jo], OS [auth jO], OT [auth ko], OY [auth mO], OZ [auth no], PAA [auth nP], PB [auth bp], PBA [auth op], PC [auth bP], PD [auth cp], PE [auth cP], PJ [auth fp], PK [auth fP], PL [auth gp], PR [auth jp], PS [auth jP], PT [auth kp], PU [auth kP], PY [auth mP], PZ [auth np], QAA [auth nQ], QBA [auth oq], QC [auth bQ], QD [auth cq], QE [auth cQ], QF [auth dq], QJ [auth fq], QK [auth fQ], QL [auth gq], QM [auth gQ], QR [auth jq], QS [auth jQ], QT [auth kq], QU [auth kQ], QZ [auth nq], RAA [auth nR], RBA [auth or], RCA [auth oR], RD [auth cr], RE [auth cR], RF [auth dr], RK [auth fR], RL [auth gr], RM [auth gR], RS [auth jR], RT [auth kr], RU [auth kR], RV [auth lr], RZ [auth nr], SAA [auth nS], SBA [auth os], SCA [auth oS], SD [auth cs], SE [auth cS], SF [auth ds], SG [auth dS], SK [auth fS], SL [auth gs], SM [auth gS], SN [auth hs], SO [auth hS], SS [auth jS], ST [auth ks], SU [auth kS], SV [auth ls], TAA [auth nT], TBA [auth ot], TCA [auth oT], TDA [auth pt], TE [auth cT], TF [auth dt], TG [auth dT], TL [auth gt], TM [auth gT], TN [auth ht], TO [auth hT], TT [auth kt], TU [auth kT], TV [auth lt], TW [auth lT], U [auth au], UBA [auth ou], UCA [auth oU], UDA [auth pu], UE [auth cU], UF [auth du], UG [auth dU], UH [auth eu], UL [auth gu], UM [auth gU], UN [auth hu], UO [auth hU], UP [auth iu], UU [auth kU], UV [auth lu], UW [auth lU], V [auth av], VA [auth aV], VBA [auth ov], VCA [auth oV], VDA [auth pv], VEA [auth pV], VF [auth dv], VG [auth dV], VH [auth ev], VM [auth gV], VN [auth hv], VO [auth hV], VP [auth iv], VU [auth kV], VV [auth lv], VW [auth lV], VX [auth mv], W [auth aw], WA [auth aW], WCA [auth oW], WDA [auth pw], WEA [auth pW], WF [auth dw], WG [auth dW], WH [auth ew], WI [auth eW], WM [auth gW], WN [auth hw], WO [auth hW], WP [auth iw], WQ [auth iW], WV [auth lw], WW [auth lW], WX [auth mw], X [auth ax], XA [auth aX], XB [auth bx], XCA [auth oX], XDA [auth px], XEA [auth pX], XG [auth dX], XH [auth ex], XI [auth eX], XN [auth hx], XO [auth hX], XP [auth ix], XQ [auth iX], XV [auth lx], XW [auth lX], XX [auth mx], XY [auth mX], Y [auth ay], YA [auth aY], YB [auth by], YC [auth bY], YDA [auth py], YEA [auth pY], YG [auth dY], YH [auth ey], YI [auth eY], YJ [auth fy], YO [auth hY], YP [auth iy], YQ [auth iY], YR [auth jy], YW [auth lY], YX [auth my], YY [auth mY], Z [auth az], ZA [auth aZ], ZB [auth bz], ZC [auth bZ], ZDA [auth pz], ZEA [auth pZ], ZH [auth ez], ZI [auth eZ], ZJ [auth fz], ZP [auth iz], ZQ [auth iZ], ZR [auth jz], ZW [auth lZ], ZX [auth mz], ZY [auth mZ], ZZ [auth nz]	IPR018774	Bacteriophage Mu, GpT	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.