8RK3 | pdb_00008rk3

Bacteriophage JBD30 baseplate - composite structure

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
AA [auth G], CA [auth X], K [auth S], M [auth Y], MA [auth p], AA [auth G], CA [auth X], K [auth S], M [auth Y], MA [auth p], O [auth m], OA [auth H], QA [auth Z], Y [auth n]	PF09356	Phage conserved hypothetical protein BR0599 (Phage_BR0599)	Phage conserved hypothetical protein BR0599	-	Family
AA [auth G], CA [auth X], K [auth S], M [auth Y], MA [auth p], AA [auth G], CA [auth X], K [auth S], M [auth Y], MA [auth p], O [auth m], OA [auth H], QA [auth Z], Y [auth n]	PF09931	Baseplate hub protein, N-terminal attachment domain (Phage_phiJL001_Gp84_N)	Baseplate hub protein, N-terminal attachment domain	This entry represents the N-terminal attachment domain (residues 1-142) of the baseplate hub protein found in phages and gene transfer agents [1]. This domain is part of a multi-domain protein that also contains an ion-binding domain (143-167, 250-26 ...	This entry represents the N-terminal attachment domain (residues 1-142) of the baseplate hub protein found in phages and gene transfer agents [1]. This domain is part of a multi-domain protein that also contains an ion-binding domain (143-167, 250-263), an oligosaccharide-binding domain (168-249), and a C-terminal clip domain (264-296). The attachment domain enables binding to the distal tail proteins and helps anchor the hub protein within the baseplate structure. This family is found almost exclusively in phages and prophage regions of bacterial genomes, including the Rhodobacter capsulatus gene transfer agent.	Domain
D [auth g], FA [auth P], R [auth O]	PF09356	Phage conserved hypothetical protein BR0599 (Phage_BR0599)	Phage conserved hypothetical protein BR0599	-	Family
D [auth g], FA [auth P], R [auth O]	PF09931	Baseplate hub protein, N-terminal attachment domain (Phage_phiJL001_Gp84_N)	Baseplate hub protein, N-terminal attachment domain	This entry represents the N-terminal attachment domain (residues 1-142) of the baseplate hub protein found in phages and gene transfer agents [1]. This domain is part of a multi-domain protein that also contains an ion-binding domain (143-167, 250-26 ...	This entry represents the N-terminal attachment domain (residues 1-142) of the baseplate hub protein found in phages and gene transfer agents [1]. This domain is part of a multi-domain protein that also contains an ion-binding domain (143-167, 250-263), an oligosaccharide-binding domain (168-249), and a C-terminal clip domain (264-296). The attachment domain enables binding to the distal tail proteins and helps anchor the hub protein within the baseplate structure. This family is found almost exclusively in phages and prophage regions of bacterial genomes, including the Rhodobacter capsulatus gene transfer agent.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
DA [auth f], EA [auth j], P [auth q], Q [auth s], RA [auth h], DA [auth f], EA [auth j], P [auth q], Q [auth s], RA [auth h], SA [auth l]	Virion structural protein	-	-	-
AA [auth G], CA [auth X], K [auth S], M [auth Y], MA [auth p], AA [auth G], CA [auth X], K [auth S], M [auth Y], MA [auth p], O [auth m], OA [auth H], QA [auth Z], Y [auth n]	Virion structural protein	-	-	-
BA [auth T], J [auth c], L [auth i], LA [auth L], N [auth k], BA [auth T], J [auth c], L [auth i], LA [auth L], N [auth k], NA [auth R], PA [auth V], X [auth K], Z [auth Q]	Virion structural protein	-	-	-
I [auth o], KA [auth d], W [auth b]	Tip attachment protein J domain-containing protein	-	-	-
F [auth a], G [auth W], H [auth e], HA [auth J], IA [auth F], F [auth a], G [auth W], H [auth e], HA [auth J], IA [auth F], JA [auth N], T [auth I], U [auth E], V [auth M]	DUF2793 domain-containing protein	-	-	-
E [auth U], GA [auth D], S [auth r]	Virion structural protein	-	-	-
D [auth g], FA [auth P], R [auth O]	DUF2163 domain-containing protein	-	-	-
A, B, C	Tape measure protein N-terminal domain-containing protein	-	virion assembly viral tail assembly viral process viral life cycle	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
DA [auth f], EA [auth j], P [auth q], Q [auth s], RA [auth h], DA [auth f], EA [auth j], P [auth q], Q [auth s], RA [auth h], SA [auth l]	IPR016893	Protein of unknown function UCP028589	Family
D [auth g], FA [auth P], R [auth O]	IPR011928	Bacteriophage phiJL001, Gp84	Family
D [auth g], FA [auth P], R [auth O]	IPR018964	Bacteriophage phiJL001, Gp84, C-terminal	Domain
A, B, C	IPR013491	Tape measure protein N-terminal	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.