8RJI | pdb_00008rji

HLA A*2402-NF9_5R pMHC complex

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ESCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8003766 3000071 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8003766 3000071 SCOP2B (2022-06-29)
J [auth K]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8003766 3000071 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8003766 3000071 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
EWD40e8rjiE1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
HWD40e8rjiH1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
J [auth K]WD40e8rjiK1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
BWD40e8rjiB1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
AWD40e8rjiA1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
DWD40e8rjiD1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
GWD40e8rjiG1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)
I [auth J]WD40e8rjiJ1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: WD40ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B,
E,
H,
J [auth K]		PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domainDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
C,
F,
K [auth L],
L [auth I]		Spike glycoprotein
B,
E,
H,
J [auth K]		Beta-2-microglobulin
A,
D,
G,
I [auth J]		MHC class I antigen-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
C,
F,
K [auth L],
L [auth I]		IPR044873Spike glycoprotein S2, coronavirus, heptad repeat 1Domain
C,
F,
K [auth L],
L [auth I]		IPR044366Spike (S) protein S1 subunit, receptor-binding domain, SARS-CoV-2Domain
C,
F,
K [auth L],
L [auth I]		IPR018548Spike (S) protein S1 subunit, receptor-binding domain, betacoronavirusDomain
C,
F,
K [auth L],
L [auth I]		IPR044341Spike (S) protein S1 subunit, N-terminal domain, SARS-CoV-likeDomain
C,
F,
K [auth L],
L [auth I]		IPR032500Spike glycoprotein S1, N-terminal domain, betacoronavirus-likeDomain
C,
F,
K [auth L],
L [auth I]		IPR042578Spike glycoprotein, betacoronavirusFamily
C,
F,
K [auth L],
L [auth I]		IPR036326Spike S1 subunit, receptor binding domain superfamily, betacoronavirusHomologous Superfamily
C,
F,
K [auth L],
L [auth I]		IPR043002Spike glycoprotein, N-terminal domain superfamilyHomologous Superfamily
C,
F,
K [auth L],
L [auth I]		IPR044874Spike glycoprotein S2, coronavirus, heptad repeat 2Domain
C,
F,
K [auth L],
L [auth I]		IPR043473Spike glycoprotein S2 superfamily, coronavirusHomologous Superfamily
C,
F,
K [auth L],
L [auth I]		IPR043607Coronavirus spike glycoprotein S1, C-terminalDomain
C,
F,
K [auth L],
L [auth I]		IPR002552Spike glycoprotein S2, coronavirusDomain
B,
E,
H,
J [auth K]		IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
B,
E,
H,
J [auth K]		IPR003006Immunoglobulin/major histocompatibility complex, conserved siteConserved Site
B,
E,
H,
J [auth K]		IPR013783Immunoglobulin-like foldHomologous Superfamily
B,
E,
H,
J [auth K]		IPR007110Immunoglobulin-like domainDomain
B,
E,
H,
J [auth K]		IPR050160Major Histocompatibility Complex/ImmunoglobulinFamily
B,
E,
H,
J [auth K]		IPR003597Immunoglobulin C1-setDomain
B,
E,
H,
J [auth K]		IPR015707Beta-2-MicroglobulinFamily
A,
D,
G,
I [auth J]		IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
A,
D,
G,
I [auth J]		IPR050208Antigen-presenting and immune regulatory MHC class I-relatedFamily
A,
D,
G,
I [auth J]		IPR037055MHC class I-like antigen recognition-like superfamilyHomologous Superfamily
A,
D,
G,
I [auth J]		IPR003597Immunoglobulin C1-setDomain
A,
D,
G,
I [auth J]		IPR013783Immunoglobulin-like foldHomologous Superfamily
A,
D,
G,
I [auth J]		IPR011161MHC class I-like antigen recognition-likeDomain
A,
D,
G,
I [auth J]		IPR011162MHC classes I/II-like antigen recognition proteinHomologous Superfamily
A,
D,
G,
I [auth J]		IPR007110Immunoglobulin-like domainDomain
A,
D,
G,
I [auth J]		IPR001039MHC class I alpha chain, alpha1 alpha2 domainsDomain
A,
D,
G,
I [auth J]		IPR003006Immunoglobulin/major histocompatibility complex, conserved siteConserved Site

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
B,
E,
H,
J [auth K]		:  P61769