8RIX | pdb_00008rix

Crystal structure of chloroplast FtsY from Arabidopsis thaliana in complex with the alarmone ppGpp

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	SRP/SRP receptor N-terminal domain-like	8056583	3001834	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Simibi-like P-loop NTPases	8056584	3002018	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e8rixA01	A: alpha bundles	X: Helical bundle insertion in helicase domains	H: Helical bundle in Hef helicase	T: Helical bundle in Hef helicase	F:	ECOD (develop294)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00448	SRP54-type protein, GTPase domain (SRP54)	SRP54-type protein, GTPase domain	This family includes relatives of the G-domain of the SRP54 family of proteins.	Domain
A	PF02881	SRP54-type protein, helical bundle domain (SRP54_N)	SRP54-type protein, helical bundle domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Cell division protein FtsY homolog, chloroplastic	ribonucleoprotein complex binding protein-containing complex binding binding signal recognition particle binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding ribonucleoprotein complex binding protein-containing complex binding binding signal recognition particle binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding cation binding metal ion binding pyrophosphatase activity GTPase activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity	protein import establishment of protein localization cellular localization protein transmembrane import into intracellular organelle transport localization protein localization to chloroplast protein transmembrane transport establishment of localization in cell intracellular protein localization protein import into chloroplast thylakoid membrane establishment of protein localization to membrane intracellular protein transmembrane transport intracellular transport protein import establishment of protein localization cellular localization protein transmembrane import into intracellular organelle transport localization protein localization to chloroplast protein transmembrane transport establishment of localization in cell intracellular protein localization protein import into chloroplast thylakoid membrane establishment of protein localization to membrane intracellular protein transmembrane transport intracellular transport localization within membrane protein localization to membrane establishment of localization transmembrane transport establishment of protein localization to chloroplast establishment of protein localization to organelle protein transport protein localization to organelle macromolecule localization cellular process intracellular protein transport membrane organization cellular component organization plastid membrane organization organelle organization plastid organization cellular component organization or biogenesis thylakoid membrane organization protein targeting protein targeting to membrane SRP-dependent cotranslational protein targeting to membrane cotranslational protein targeting to membrane establishment of protein localization to endoplasmic reticulum protein targeting to ER photosynthesis photosynthesis, light reaction photosynthetic electron transport chain electron transport chain photosynthetic electron transport in photosystem II metabolic process generation of precursor metabolites and energy	cellular anatomical structure membrane chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope bounding membrane of organelle membraneless organelle cellular anatomical structure membrane chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope bounding membrane of organelle membraneless organelle plastid envelope thylakoid chloroplast intracellular membraneless organelle intracellular membrane-bounded organelle thylakoid membrane organelle chloroplast thylakoid outer membrane cytoplasm photosynthetic membrane organelle membrane plastid stroma chloroplast stroma cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR004390	Signal-recognition particle receptor FtsY	Family
A	IPR000897	Signal recognition particle, SRP54 subunit, GTPase domain	Domain
A	IPR036225	SRP/SRP receptor, N-terminal	Homologous Superfamily
A	IPR042101	Signal recognition particle SRP54, N-terminal domain superfamily	Homologous Superfamily
A	IPR003593	AAA+ ATPase domain	Domain
A	IPR013822	Signal recognition particle SRP54, helical bundle	Domain
A	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.