8RBZ | pdb_00008rbz

Structure of Integrator-PP2A-SOSS-CTD post-termination complex


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyNucleic acid-binding proteins 8065300 3000135 SCOP2B (2022-06-29)
CSCOP2B SuperfamilySOSSC C-terminal motif-like 8052447 3002118 SCOP2B (2022-06-29)
G [auth c]SCOP2B SuperfamilyARM repeat-like 8052459 3000116 SCOP2B (2022-06-29)
G [auth c]SCOP2B SuperfamilyARM repeat-like 8052456 3000116 SCOP2B (2022-06-29)
R [auth p]SCOP2B SuperfamilyARM repeat-like 8038568 3000116 SCOP2B (2022-06-29)
S [auth q]SCOP2B SuperfamilyMetallo-dependent phosphatases 8039778 3001067 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF21473Single-stranded DNA binding protein Ssb-like, OB fold (OB_Ssb-like)Single-stranded DNA binding protein Ssb-like, OB foldThis entry represents the OB fold of single-stranded DNA binding protein Ssb from archaea and its homologues from mammals and plants. Members of this entry have a simple domain organisation consisting of a single DNA-binding OB fold coupled to a flex ...This entry represents the OB fold of single-stranded DNA binding protein Ssb from archaea and its homologues from mammals and plants. Members of this entry have a simple domain organisation consisting of a single DNA-binding OB fold coupled to a flexible C-terminal tail [1-3]. The ssDNA recognition is modulated by base-stacking of three key aromatic residues in archaeal Ssb, in contrast with the OB domain of the human homologue hSSB1 [3].
Domain
PF14750Integrator complex subunit 2 (INTS2)Integrator complex subunit 2- Family
PF10189Integrator complex subunit 3 N-terminal (Ints3_N)Integrator complex subunit 3 N-terminal- Repeat
D [auth Y]PF05001RNA polymerase Rpb1 C-terminal repeat (RNA_pol_Rpb1_R)RNA polymerase Rpb1 C-terminal repeat- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 1]UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK-UNK---
SOSS complex subunit B1
SOSS complex subunit C-
D [auth Y]DNA-directed RNA polymerase subunit
E [auth a]Integrator complex subunit 1-
F [auth b]Integrator complex subunit 2-
G [auth c]Integrator complex subunit 3-
H [auth d]Integrator complex subunit 4
I [auth e]Integrator complex subunit 5-
J [auth f]Integrator complex subunit 6
K [auth g]Integrator complex subunit 7-
L [auth h]Integrator complex subunit 8-
M [auth i]Integrator complex subunit 9-
O [auth k]Integrator complex subunit 11
P [auth n]Integrator complex subunit 14-
Q [auth o]Integrator complex subunit 15-
R [auth p]Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform
S [auth q]Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform
T [auth r]DSS1---
U [auth m]Integrator complex subunit 13
N [auth j]Integrator complex subunit 10-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR051231SOSS complex subunit BFamily
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IPR048970Single-stranded DNA binding protein Ssb-like, OB foldDomain
IPR031821SOSS complex subunit CFamily
D [auth Y]IPR007066RNA polymerase Rpb1, domain 3Domain
D [auth Y]IPR007081RNA polymerase Rpb1, domain 5Domain
D [auth Y]IPR007073RNA polymerase Rpb1, domain 7Domain
D [auth Y]IPR045867DNA-directed RNA polymerase, subunit beta-primeFamily
D [auth Y]IPR042102RNA polymerase Rpb1, domain 3 superfamilyHomologous Superfamily
D [auth Y]IPR007075RNA polymerase Rpb1, domain 6Domain
D [auth Y]IPR000684RNA polymerase II, heptapeptide repeat, eukaryoticRepeat
D [auth Y]IPR007083RNA polymerase Rpb1, domain 4Domain
D [auth Y]IPR038593RNA polymerase Rpb1, domain 7 superfamilyHomologous Superfamily
D [auth Y]IPR000722RNA polymerase, alpha subunitDomain
D [auth Y]IPR044893RNA polymerase Rpb1, clamp domain superfamilyHomologous Superfamily
D [auth Y]IPR038120RNA polymerase Rpb1, funnel domain superfamilyHomologous Superfamily
D [auth Y]IPR006592RNA polymerase, N-terminalDomain
D [auth Y]IPR007080RNA polymerase Rpb1, domain 1Domain
E [auth a]IPR016024Armadillo-type foldHomologous Superfamily
E [auth a]IPR053964Integrator complex subunit 1, R3 domainDomain
E [auth a]IPR053966Integrator complex subunit 1, INTS2-binding domainDomain
E [auth a]IPR022145Integrator complex subunit 1, RPB2-binding domainDomain
E [auth a]IPR053965Integrator complex subunit 1, R4 domainDomain
E [auth a]IPR038902Integrator complex subunit 1Family
F [auth b]IPR026236Integrator complex subunit 2, metazoaFamily
F [auth b]IPR029321Integrator complex subunit 2Family
G [auth c]IPR045334Integrator complex subunit 3Family
G [auth c]IPR056518Ints3-like, C-terminalDomain
G [auth c]IPR019333Integrator complex subunit 3, N-terminalDomain
H [auth d]IPR016024Armadillo-type foldHomologous Superfamily
H [auth d]IPR011989Armadillo-like helicalHomologous Superfamily
H [auth d]IPR056235INTS4, 8 helical bundle domainDomain
I [auth e]IPR040316Integrator complex subunit 5Family
I [auth e]IPR029445Integrator complex subunit 5, N-terminalDomain
I [auth e]IPR029444Integrator complex subunit 5, C-terminalDomain
J [auth f]IPR036465von Willebrand factor A-like domain superfamilyHomologous Superfamily
J [auth f]IPR002035von Willebrand factor, type ADomain
J [auth f]IPR029307INTS6/SAGE1/DDX26B/CT45, C-terminalDomain
J [auth f]IPR051113Integrator complex subunit 6Family
K [auth g]IPR056517Integrator complex subunit 7, helical bundleDomain
K [auth g]IPR016024Armadillo-type foldHomologous Superfamily
K [auth g]IPR033060Integrator complex subunit 7Family
K [auth g]IPR054519Integrator complex subunit 7, C-terminal domainDomain
K [auth g]IPR056516Integrator complex subunit 7, N-terminalDomain
L [auth h]IPR038751INTS8Family
L [auth h]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
M [auth i]IPR027074Integrator complex subunit 9Family
M [auth i]IPR001279Metallo-beta-lactamaseDomain
M [auth i]IPR022712Beta-Casp domainDomain
M [auth i]IPR036866Ribonuclease Z/Hydroxyacylglutathione hydrolase-likeHomologous Superfamily
M [auth i]IPR048660Integrator complex subunit 9-like, C-terminal domainDomain
O [auth k]IPR001279Metallo-beta-lactamaseDomain
O [auth k]IPR022712Beta-Casp domainDomain
O [auth k]IPR050698RNA Processing Metallo-Beta-LactamaseFamily
O [auth k]IPR041897Integrator complex subunit 11, MBL-foldDomain
O [auth k]IPR048662Integrator complex subunit 11, C-terminal domainDomain
O [auth k]IPR011108Zn-dependent metallo-hydrolase, RNA specificity domainDomain
O [auth k]IPR036866Ribonuclease Z/Hydroxyacylglutathione hydrolase-likeHomologous Superfamily
P [auth n]IPR046471Integrator complex subunit 14, C-terminalDomain
P [auth n]IPR045814Integrator complex subunit 14, beta-barrel domainDomain
P [auth n]IPR036465von Willebrand factor A-like domain superfamilyHomologous Superfamily
P [auth n]IPR039841Integrator complex subunit 14Family
P [auth n]IPR002035von Willebrand factor, type ADomain
Q [auth o]IPR027844Integrator complex subunit 15Family
R [auth p]IPR054573Phosphatase PP2A regulatory subunit A/Splicing factor 3B subunit 1-like, HEAT repeatDomain
R [auth p]IPR016024Armadillo-type foldHomologous Superfamily
R [auth p]IPR021133HEAT, type 2Repeat
R [auth p]IPR011989Armadillo-like helicalHomologous Superfamily
R [auth p]IPR051023Protein Phosphatase 2A Regulatory Subunit AFamily
R [auth p]IPR000357HEAT repeatRepeat
S [auth q]IPR047129Serine/Threonine protein phosphatase PP2A-likeFamily
S [auth q]IPR029052Metallo-dependent phosphatase-likeHomologous Superfamily
S [auth q]IPR004843Calcineurin-like, phosphoesterase domainDomain
S [auth q]IPR006186Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphataseDomain
U [auth m]IPR019355Cell cycle regulator Mat89BbFamily
N [auth j]IPR026164Integrator complex subunit 10Family

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosQ9BQ15
PharosQ9NRY2
E [auth a]PharosQ8N201
F [auth b]PharosQ9H0H0
H [auth d]PharosQ96HW7
I [auth e]PharosQ6P9B9
J [auth f]PharosQ9UL03
K [auth g]PharosQ9NVH2
L [auth h]PharosQ75QN2
M [auth i]PharosQ9NV88
O [auth k]PharosQ5TA45
P [auth n]PharosQ96SY0
Q [auth o]PharosQ96N11
R [auth p]PharosP30153
S [auth q]PharosP67775
U [auth m]PharosQ9NVM9
N [auth j]PharosQ9NVR2