8R8B | pdb_00008r8b

Wnt binding to COPalpha and COPBeta2 directs secretion on extracellular vesicles

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
X [auth XXX]	SCOP2B Superfamily	WD40 repeat-like	8057071	3001694	SCOP2B (2022-06-29)
W [auth WWW]	SCOP2B Superfamily	WD40 repeat-like	8057071	3001694	SCOP2B (2022-06-29)
V [auth VVV]	SCOP2B Superfamily	WD40 repeat-like	8057071	3001694	SCOP2B (2022-06-29)
U [auth UUU]	SCOP2B Superfamily	WD40 repeat-like	8057071	3001694	SCOP2B (2022-06-29)
T [auth TTT]	SCOP2B Superfamily	WD40 repeat-like	8057071	3001694	SCOP2B (2022-06-29)
S [auth SSS]	SCOP2B Superfamily	WD40 repeat-like	8057071	3001694	SCOP2B (2022-06-29)
R [auth RRR]	SCOP2B Superfamily	WD40 repeat-like	8057071	3001694	SCOP2B (2022-06-29)
Q [auth QQQ]	SCOP2B Superfamily	WD40 repeat-like	8057071	3001694	SCOP2B (2022-06-29)
P [auth PPP]	SCOP2B Superfamily	WD40 repeat-like	8057071	3001694	SCOP2B (2022-06-29)
O [auth OOO]	SCOP2B Superfamily	WD40 repeat-like	8057071	3001694	SCOP2B (2022-06-29)
N [auth NNN]	SCOP2B Superfamily	WD40 repeat-like	8057071	3001694	SCOP2B (2022-06-29)
M [auth MMM]	SCOP2B Superfamily	WD40 repeat-like	8057071	3001694	SCOP2B (2022-06-29)
L [auth LLL]	SCOP2B Superfamily	WD40 repeat-like	8057071	3001694	SCOP2B (2022-06-29)
K [auth KKK]	SCOP2B Superfamily	WD40 repeat-like	8057071	3001694	SCOP2B (2022-06-29)
J [auth JJJ]	SCOP2B Superfamily	WD40 repeat-like	8057071	3001694	SCOP2B (2022-06-29)
I [auth III]	SCOP2B Superfamily	WD40 repeat-like	8057071	3001694	SCOP2B (2022-06-29)
H [auth HHH]	SCOP2B Superfamily	WD40 repeat-like	8057071	3001694	SCOP2B (2022-06-29)
G [auth GGG]	SCOP2B Superfamily	WD40 repeat-like	8057071	3001694	SCOP2B (2022-06-29)
F [auth FFF]	SCOP2B Superfamily	WD40 repeat-like	8057071	3001694	SCOP2B (2022-06-29)
E [auth EEE]	SCOP2B Superfamily	WD40 repeat-like	8057071	3001694	SCOP2B (2022-06-29)
D [auth DDD]	SCOP2B Superfamily	WD40 repeat-like	8057071	3001694	SCOP2B (2022-06-29)
C [auth CCC]	SCOP2B Superfamily	WD40 repeat-like	8057071	3001694	SCOP2B (2022-06-29)
B [auth BBB]	SCOP2B Superfamily	WD40 repeat-like	8057071	3001694	SCOP2B (2022-06-29)
A [auth AAA]	SCOP2B Superfamily	WD40 repeat-like	8057071	3001694	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
X [auth XXX]	Rnf-Nqr	e8r8bXXX1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Rnf-Nqr	ECOD (v295)
W [auth WWW]	Rnf-Nqr	e8r8bWWW1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Rnf-Nqr	ECOD (v295)
V [auth VVV]	Rnf-Nqr	e8r8bVVV1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Rnf-Nqr	ECOD (v295)
U [auth UUU]	Rnf-Nqr	e8r8bUUU1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Rnf-Nqr	ECOD (v295)
T [auth TTT]	Rnf-Nqr	e8r8bTTT1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Rnf-Nqr	ECOD (v295)
S [auth SSS]	Rnf-Nqr	e8r8bSSS1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Rnf-Nqr	ECOD (v295)
R [auth RRR]	Rnf-Nqr	e8r8bRRR1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Rnf-Nqr	ECOD (v295)
Q [auth QQQ]	Rnf-Nqr	e8r8bQQQ1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Rnf-Nqr	ECOD (v295)
P [auth PPP]	Rnf-Nqr	e8r8bPPP1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Rnf-Nqr	ECOD (v295)
O [auth OOO]	Rnf-Nqr	e8r8bOOO1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Rnf-Nqr	ECOD (v295)
N [auth NNN]	Rnf-Nqr	e8r8bNNN1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Rnf-Nqr	ECOD (v295)
M [auth MMM]	Rnf-Nqr	e8r8bMMM1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Rnf-Nqr	ECOD (v295)
L [auth LLL]	Rnf-Nqr	e8r8bLLL1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Rnf-Nqr	ECOD (v295)
K [auth KKK]	Rnf-Nqr	e8r8bKKK1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Rnf-Nqr	ECOD (v295)
J [auth JJJ]	Rnf-Nqr	e8r8bJJJ1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Rnf-Nqr	ECOD (v295)
I [auth III]	Rnf-Nqr	e8r8bIII1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Rnf-Nqr	ECOD (v295)
H [auth HHH]	Rnf-Nqr	e8r8bHHH1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Rnf-Nqr	ECOD (v295)
G [auth GGG]	Rnf-Nqr	e8r8bGGG1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Rnf-Nqr	ECOD (v295)
F [auth FFF]	Rnf-Nqr	e8r8bFFF1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Rnf-Nqr	ECOD (v295)
E [auth EEE]	Rnf-Nqr	e8r8bEEE1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Rnf-Nqr	ECOD (v295)
D [auth DDD]	Rnf-Nqr	e8r8bDDD1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Rnf-Nqr	ECOD (v295)
C [auth CCC]	Rnf-Nqr	e8r8bCCC1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Rnf-Nqr	ECOD (v295)
B [auth BBB]	Rnf-Nqr	e8r8bBBB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Rnf-Nqr	ECOD (v295)
A [auth AAA]	Rnf-Nqr	e8r8bAAA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Rnf-Nqr	ECOD (v295)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD], E [auth EEE], A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD], E [auth EEE], F [auth FFF], G [auth GGG], H [auth HHH], I [auth III], J [auth JJJ], K [auth KKK], L [auth LLL], M [auth MMM], N [auth NNN], O [auth OOO], P [auth PPP], Q [auth QQQ], R [auth RRR], S [auth SSS], T [auth TTT], U [auth UUU], V [auth VVV], W [auth WWW], X [auth XXX]	PF00400	WD domain, G-beta repeat (WD40)	WD domain, G-beta repeat	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
AA [auth ccc], BA [auth ddd], CA [auth eee], DA [auth fff], EA [auth ggg], AA [auth ccc], BA [auth ddd], CA [auth eee], DA [auth fff], EA [auth ggg], FA [auth hhh], GA [auth iii], HA [auth jjj], IA [auth kkk], JA [auth lll], KA [auth mmm], LA [auth nnn], MA [auth ooo], NA [auth ppp], OA [auth qqq], PA [auth rrr], QA [auth sss], RA [auth ttt], SA [auth uuu], TA [auth vvv], UA [auth www], VA [auth xxx], Y [auth aaa], Z [auth bbb]	Small ribosomal subunit protein mS37	structural molecule activity structural constituent of ribosome	mitochondrial translation primary metabolic process mitochondrial gene expression gene expression translation macromolecule biosynthetic process protein biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process protein metabolic process	membrane-bounded organelle mitochondrial membrane intracellular anatomical structure organelle inner membrane mitochondrion membrane intracellular membrane-bounded organelle mitochondrial inner membrane intracellular organelle organelle envelope cellular anatomical structure organelle mitochondrial envelope cytoplasm membrane-bounded organelle mitochondrial membrane intracellular anatomical structure organelle inner membrane mitochondrion membrane intracellular membrane-bounded organelle mitochondrial inner membrane intracellular organelle organelle envelope cellular anatomical structure organelle mitochondrial envelope cytoplasm organelle membrane protein-containing complex membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen mitochondrial small ribosomal subunit ribosomal subunit organellar ribosome membraneless organelle organellar small ribosomal subunit ribosome mitochondrial protein-containing complex mitochondrial ribosome small ribosomal subunit intracellular membraneless organelle organelle lumen ribonucleoprotein complex
A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD], E [auth EEE], A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD], E [auth EEE], F [auth FFF], G [auth GGG], H [auth HHH], I [auth III], J [auth JJJ], K [auth KKK], L [auth LLL], M [auth MMM], N [auth NNN], O [auth OOO], P [auth PPP], Q [auth QQQ], R [auth RRR], S [auth SSS], T [auth TTT], U [auth UUU], V [auth VVV], W [auth WWW], X [auth XXX]	Coatomer subunit beta'	protein binding binding ubiquitin binding ubiquitin-like protein binding structural molecule activity	localization transport cellular process establishment of localization Golgi vesicle transport vesicle-mediated transport intra-Golgi vesicle-mediated transport cellular localization establishment of protein localization intracellular transport protein transport establishment of localization in cell macromolecule localization intracellular protein localization localization transport cellular process establishment of localization Golgi vesicle transport vesicle-mediated transport intra-Golgi vesicle-mediated transport cellular localization establishment of protein localization intracellular transport protein transport establishment of localization in cell macromolecule localization intracellular protein localization intracellular protein transport endosomal transport intercellular transport late endosome to vacuole transport late endosome to vacuole transport via multivesicular body sorting pathway multivesicular body sorting pathway vacuolar transport endosome transport via multivesicular body sorting pathway retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum intracellular mRNA localization RNA localization endoplasmic reticulum to Golgi vesicle-mediated transport	membrane-bounded organelle protein-containing complex intracellular anatomical structure vesicle coat intracellular vesicle membrane protein complex endomembrane system COPI-coated vesicle membrane coat intracellular organelle cellular anatomical structure bounding membrane of organelle vesicle membrane cytoplasmic vesicle membrane-bounded organelle protein-containing complex intracellular anatomical structure vesicle coat intracellular vesicle membrane protein complex endomembrane system COPI-coated vesicle membrane coat intracellular organelle cellular anatomical structure bounding membrane of organelle vesicle membrane cytoplasmic vesicle coated vesicle Golgi-associated vesicle vesicle COPI vesicle coat Golgi apparatus membrane coated membrane intracellular membrane-bounded organelle COPI-coated vesicle membrane coated vesicle membrane cytoplasmic vesicle membrane organelle Golgi-associated vesicle membrane cytoplasm organelle membrane Golgi membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
AA [auth ccc], BA [auth ddd], CA [auth eee], DA [auth fff], EA [auth ggg], AA [auth ccc], BA [auth ddd], CA [auth eee], DA [auth fff], EA [auth ggg], FA [auth hhh], GA [auth iii], HA [auth jjj], IA [auth kkk], JA [auth lll], KA [auth mmm], LA [auth nnn], MA [auth ooo], NA [auth ppp], OA [auth qqq], PA [auth rrr], QA [auth sss], RA [auth ttt], SA [auth uuu], TA [auth vvv], UA [auth www], VA [auth xxx], Y [auth aaa], Z [auth bbb]	IPR010625	CHCH	Domain
AA [auth ccc], BA [auth ddd], CA [auth eee], DA [auth fff], EA [auth ggg], AA [auth ccc], BA [auth ddd], CA [auth eee], DA [auth fff], EA [auth ggg], FA [auth hhh], GA [auth iii], HA [auth jjj], IA [auth kkk], JA [auth lll], KA [auth mmm], LA [auth nnn], MA [auth ooo], NA [auth ppp], OA [auth qqq], PA [auth rrr], QA [auth sss], RA [auth ttt], SA [auth uuu], TA [auth vvv], UA [auth www], VA [auth xxx], Y [auth aaa], Z [auth bbb]	IPR017264	Small ribosomal subunit protein mS37, fungal-type	Family
A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD], E [auth EEE], A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD], E [auth EEE], F [auth FFF], G [auth GGG], H [auth HHH], I [auth III], J [auth JJJ], K [auth KKK], L [auth LLL], M [auth MMM], N [auth NNN], O [auth OOO], P [auth PPP], Q [auth QQQ], R [auth RRR], S [auth SSS], T [auth TTT], U [auth UUU], V [auth VVV], W [auth WWW], X [auth XXX]	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD], E [auth EEE], A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD], E [auth EEE], F [auth FFF], G [auth GGG], H [auth HHH], I [auth III], J [auth JJJ], K [auth KKK], L [auth LLL], M [auth MMM], N [auth NNN], O [auth OOO], P [auth PPP], Q [auth QQQ], R [auth RRR], S [auth SSS], T [auth TTT], U [auth UUU], V [auth VVV], W [auth WWW], X [auth XXX]	IPR016453	Coatomer beta' subunit (COPB2)	Family
A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD], E [auth EEE], A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD], E [auth EEE], F [auth FFF], G [auth GGG], H [auth HHH], I [auth III], J [auth JJJ], K [auth KKK], L [auth LLL], M [auth MMM], N [auth NNN], O [auth OOO], P [auth PPP], Q [auth QQQ], R [auth RRR], S [auth SSS], T [auth TTT], U [auth UUU], V [auth VVV], W [auth WWW], X [auth XXX]	IPR050844	Coatomer complex subunit	Family
A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD], E [auth EEE], A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD], E [auth EEE], F [auth FFF], G [auth GGG], H [auth HHH], I [auth III], J [auth JJJ], K [auth KKK], L [auth LLL], M [auth MMM], N [auth NNN], O [auth OOO], P [auth PPP], Q [auth QQQ], R [auth RRR], S [auth SSS], T [auth TTT], U [auth UUU], V [auth VVV], W [auth WWW], X [auth XXX]	IPR020472	PAC1/LIS1-like, WD-40 repeat	Repeat
A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD], E [auth EEE], A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD], E [auth EEE], F [auth FFF], G [auth GGG], H [auth HHH], I [auth III], J [auth JJJ], K [auth KKK], L [auth LLL], M [auth MMM], N [auth NNN], O [auth OOO], P [auth PPP], Q [auth QQQ], R [auth RRR], S [auth SSS], T [auth TTT], U [auth UUU], V [auth VVV], W [auth WWW], X [auth XXX]	IPR001680	WD40 repeat	Repeat
A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD], E [auth EEE], A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD], E [auth EEE], F [auth FFF], G [auth GGG], H [auth HHH], I [auth III], J [auth JJJ], K [auth KKK], L [auth LLL], M [auth MMM], N [auth NNN], O [auth OOO], P [auth PPP], Q [auth QQQ], R [auth RRR], S [auth SSS], T [auth TTT], U [auth UUU], V [auth VVV], W [auth WWW], X [auth XXX]	IPR006692	COPA/B, second beta-propeller domain	Domain
A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD], E [auth EEE], A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD], E [auth EEE], F [auth FFF], G [auth GGG], H [auth HHH], I [auth III], J [auth JJJ], K [auth KKK], L [auth LLL], M [auth MMM], N [auth NNN], O [auth OOO], P [auth PPP], Q [auth QQQ], R [auth RRR], S [auth SSS], T [auth TTT], U [auth UUU], V [auth VVV], W [auth WWW], X [auth XXX]	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD], E [auth EEE], A [auth AAA], B [auth BBB], C [auth CCC], D [auth DDD], E [auth EEE], F [auth FFF], G [auth GGG], H [auth HHH], I [auth III], J [auth JJJ], K [auth KKK], L [auth LLL], M [auth MMM], N [auth NNN], O [auth OOO], P [auth PPP], Q [auth QQQ], R [auth RRR], S [auth SSS], T [auth TTT], U [auth UUU], V [auth VVV], W [auth WWW], X [auth XXX]	IPR056176	COPA/B, TPR domain	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.