Annotations: 8R2D

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
D	PF13646	HEAT repeats (HEAT_2)	HEAT repeats	-	Repeat
D	PF25458	Integrator subunit 4 family C-terminal Ig-like domain (INTS4_C)	Integrator subunit 4 family C-terminal Ig-like domain	This entry represents the C-terminal domain of Integrator subunit 4 (INTS4). The domain has been structurally identified near the INTS9 beta-CASP domain but is poorly resolved in current structures, suggesting flexibility. INTS4 is a component of the ...	This entry represents the C-terminal domain of Integrator subunit 4 (INTS4). The domain has been structurally identified near the INTS9 beta-CASP domain but is poorly resolved in current structures, suggesting flexibility. INTS4 is a component of the Integrator complex which plays essential roles in snRNA 3' end processing and transcription termination. The specific function of the C-terminal domain remains to be determined.	Domain
D	PF20168	Sister chromatid cohesion protein PDS5 protein (PDS5)	Sister chromatid cohesion protein PDS5 protein	-	Repeat
D	PF24493	INTS4 8 helical bundle domain (INTS4_8HBD)	INTS4 8 helical bundle domain	This domain is found in the homologs of Integrator complex subunit 4 (INTS4). INTS4 along with INTS9 and INTS11 constitute the Integrator cleavage module, which contains endonuclease activity and resembles the cleavage module of the cleavage and pol ...	This domain is found in the homologs of Integrator complex subunit 4 (INTS4). INTS4 along with INTS9 and INTS11 constitute the Integrator cleavage module, which contains endonuclease activity and resembles the cleavage module of the cleavage and polyadenylation specific factor required for 3' processing of mRNA transcripts. The domain represented by this entry makes extensive contacts with INTS7 and stabilize the beta-CASP domain of INTS9 in the cleavage module [1,2]. It folds into an eight alpha-helical bundle.	Domain
C	PF07521	Zn-dependent metallo-hydrolase RNA specificity domain (RMMBL)	Zn-dependent metallo-hydrolase RNA specificity domain	-	Motif
C	PF16661	Metallo-beta-lactamase superfamily domain (Lactamase_B_6)	Metallo-beta-lactamase superfamily domain	This family is part of the metallo-beta-lactamase superfamily.	Domain
C	PF10996	Beta-Casp domain (Beta-Casp)	Beta-Casp domain	The beta-CASP domain is found C terminal to the beta-lactamase domain in pre-mRNA 3'-end-processing endonuclease. The active site of this enzyme is located at the interface of these two domains [1].	Domain
B	PF16661	Metallo-beta-lactamase superfamily domain (Lactamase_B_6)	Metallo-beta-lactamase superfamily domain	This family is part of the metallo-beta-lactamase superfamily.	Domain
B	PF10996	Beta-Casp domain (Beta-Casp)	Beta-Casp domain	The beta-CASP domain is found C terminal to the beta-lactamase domain in pre-mRNA 3'-end-processing endonuclease. The active site of this enzyme is located at the interface of these two domains [1].	Domain
A	PF02985	HEAT repeat (HEAT)	HEAT repeat	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
D	Integrator complex subunit 4	protein-macromolecule adaptor activity molecular adaptor activity	catabolic process RNA metabolic process macromolecule catabolic process nucleobase-containing compound metabolic process RNA biosynthetic process DNA-templated transcription nucleic acid biosynthetic process transcription by RNA polymerase II RNA surveillance RNA catabolic process transcription initiation at RNA polymerase II promoter RNA polymerase II transcription initiation surveillance nuclear RNA surveillance primary metabolic process catabolic process RNA metabolic process macromolecule catabolic process nucleobase-containing compound metabolic process RNA biosynthetic process DNA-templated transcription nucleic acid biosynthetic process transcription by RNA polymerase II RNA surveillance RNA catabolic process transcription initiation at RNA polymerase II promoter RNA polymerase II transcription initiation surveillance nuclear RNA surveillance primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process DNA-templated transcription initiation nucleobase-containing compound catabolic process biosynthetic process nucleic acid catabolic process metabolic process cellular process macromolecule metabolic process snRNA metabolic process snRNA processing RNA processing transcription elongation by RNA polymerase II regulation of cellular process regulation of primary metabolic process regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of DNA-templated transcription elongation regulation of biological process regulation of transcription elongation by RNA polymerase II biological regulation regulation of macromolecule metabolic process regulation of gene expression DNA-templated transcription elongation regulation of macromolecule biosynthetic process regulation of DNA-templated transcription regulation of metabolic process	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen protein-containing complex integrator complex nuclear protein-containing complex cytoplasm nucleoplasm INTAC complex
C	Integrator complex subunit 11	endonuclease activity nuclease activity catalytic activity, acting on RNA RNA endonuclease activity catalytic activity, acting on a nucleic acid RNA nuclease activity catalytic activity hydrolase activity cation binding ion binding binding metal ion binding small molecule binding	catabolic process RNA metabolic process macromolecule catabolic process nucleobase-containing compound metabolic process RNA biosynthetic process DNA-templated transcription nucleic acid biosynthetic process transcription by RNA polymerase II RNA surveillance RNA catabolic process transcription initiation at RNA polymerase II promoter RNA polymerase II transcription initiation surveillance nuclear RNA surveillance primary metabolic process catabolic process RNA metabolic process macromolecule catabolic process nucleobase-containing compound metabolic process RNA biosynthetic process DNA-templated transcription nucleic acid biosynthetic process transcription by RNA polymerase II RNA surveillance RNA catabolic process transcription initiation at RNA polymerase II promoter RNA polymerase II transcription initiation surveillance nuclear RNA surveillance primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process DNA-templated transcription initiation nucleobase-containing compound catabolic process biosynthetic process nucleic acid catabolic process metabolic process cellular process macromolecule metabolic process snRNA 3'-end processing snRNA metabolic process snRNA processing RNA 3'-end processing RNA processing transcription elongation by RNA polymerase II regulation of cellular process regulation of primary metabolic process regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of DNA-templated transcription elongation regulation of biological process regulation of transcription elongation by RNA polymerase II biological regulation regulation of macromolecule metabolic process regulation of gene expression DNA-templated transcription elongation regulation of macromolecule biosynthetic process regulation of DNA-templated transcription regulation of metabolic process	cellular anatomical structure extracellular region extracellular space blood microparticle intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle intracellular organelle protein-containing complex integrator complex organelle nucleus nuclear protein-containing complex cellular anatomical structure extracellular region extracellular space blood microparticle intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle intracellular organelle protein-containing complex integrator complex organelle nucleus nuclear protein-containing complex intracellular membrane-bounded organelle membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen INTAC complex
B	Integrator complex subunit 9	-	cellular response to stimulus negative regulation of transforming growth factor beta receptor signaling pathway regulation of cellular process cell surface receptor protein serine/threonine kinase signaling pathway cellular response to growth factor stimulus response to stimulus negative regulation of signaling signaling cellular response to transforming growth factor beta stimulus regulation of transmembrane receptor protein serine/threonine kinase signaling pathway negative regulation of biological process regulation of signal transduction negative regulation of cell communication cell communication regulation of transforming growth factor beta receptor signaling pathway cellular response to stimulus negative regulation of transforming growth factor beta receptor signaling pathway regulation of cellular process cell surface receptor protein serine/threonine kinase signaling pathway cellular response to growth factor stimulus response to stimulus negative regulation of signaling signaling cellular response to transforming growth factor beta stimulus regulation of transmembrane receptor protein serine/threonine kinase signaling pathway negative regulation of biological process regulation of signal transduction negative regulation of cell communication cell communication regulation of transforming growth factor beta receptor signaling pathway cellular response to endogenous stimulus negative regulation of cellular process signal transduction enzyme-linked receptor protein signaling pathway regulation of signaling regulation of biological process cell surface receptor signaling pathway negative regulation of response to stimulus regulation of cellular response to transforming growth factor beta stimulus response to endogenous stimulus regulation of cellular response to growth factor stimulus biological regulation negative regulation of signal transduction response to transforming growth factor beta regulation of response to stimulus transforming growth factor beta receptor signaling pathway regulation of cell communication cellular process response to growth factor transforming growth factor beta receptor superfamily signaling pathway negative regulation of transmembrane receptor protein serine/threonine kinase signaling pathway catabolic process RNA metabolic process macromolecule catabolic process nucleobase-containing compound metabolic process RNA biosynthetic process DNA-templated transcription nucleic acid biosynthetic process transcription by RNA polymerase II RNA surveillance RNA catabolic process transcription initiation at RNA polymerase II promoter RNA polymerase II transcription initiation surveillance nuclear RNA surveillance primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process DNA-templated transcription initiation nucleobase-containing compound catabolic process biosynthetic process nucleic acid catabolic process metabolic process macromolecule metabolic process snRNA 3'-end processing snRNA metabolic process snRNA processing RNA 3'-end processing RNA processing transcription elongation by RNA polymerase II regulation of primary metabolic process regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of DNA-templated transcription elongation regulation of transcription elongation by RNA polymerase II regulation of macromolecule metabolic process regulation of gene expression DNA-templated transcription elongation regulation of macromolecule biosynthetic process regulation of DNA-templated transcription regulation of metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle intracellular organelle protein-containing complex integrator complex organelle nucleus nuclear protein-containing complex intracellular membrane-bounded organelle membrane-enclosed lumen intracellular organelle lumen cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle intracellular organelle protein-containing complex integrator complex organelle nucleus nuclear protein-containing complex intracellular membrane-bounded organelle membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen INTAC complex
A	BRCA1-associated ATM activator 1	enzyme regulator activity molecular function inhibitor activity molecular function regulator activity nuclease inhibitor activity enzyme inhibitor activity ribonuclease inhibitor activity	cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process regulation of growth regulation of biological process regulation of cellular process regulation of cellular component organization biological regulation growth positive regulation of biological process positive regulation of cell growth cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process regulation of growth regulation of biological process regulation of cellular process regulation of cellular component organization biological regulation growth positive regulation of biological process positive regulation of cell growth regulation of cell growth cell growth cellular component organization positive regulation of growth cellular component organization or biogenesis positive regulation of cellular process response to ionizing radiation response to radiation response to abiotic stimulus localization mitochondrion localization organelle localization cellular component biogenesis cellular component assembly protein-containing complex organization integrator complex assembly protein-containing complex assembly cell population proliferation apoptotic process cell death programmed cell death positive regulation of phosphorylation regulation of protein modification process regulation of protein phosphorylation positive regulation of protein metabolic process positive regulation of phosphate metabolic process regulation of primary metabolic process positive regulation of metabolic process positive regulation of protein modification process phosphate-containing compound metabolic process positive regulation of macromolecule metabolic process protein metabolic process positive regulation of protein phosphorylation phosphorus metabolic process protein modification process protein phosphorylation positive regulation of phosphorus metabolic process phosphorylation regulation of protein metabolic process primary metabolic process regulation of macromolecule metabolic process macromolecule modification metabolic process regulation of phosphorus metabolic process regulation of phosphorylation macromolecule metabolic process regulation of metabolic process cell migration cell motility protein localization to organelle macromolecule localization protein localization to nucleus intracellular protein localization monosaccharide metabolic process carbohydrate metabolic process hexose metabolic process small molecule metabolic process glucose metabolic process	cellular anatomical structure membrane intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle cellular anatomical structure membrane intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
D	IPR016024	Armadillo-type fold	Homologous Superfamily
D	IPR011989	Armadillo-like helical	Homologous Superfamily
D	IPR057412	Integrator complex subunit 4/Protein SIEL, C-terminal Ig-like domain	Domain
D	IPR056235	INTS4, 8 helical bundle domain	Domain
C	IPR001279	Metallo-beta-lactamase	Domain
C	IPR022712	Beta-Casp domain	Domain
C	IPR050698	RNA Processing Metallo-Beta-Lactamase	Family
C	IPR041897	Integrator complex subunit 11, MBL-fold	Domain
C	IPR048662	Integrator complex subunit 11, C-terminal domain	Domain
C	IPR011108	Zn-dependent metallo-hydrolase, RNA specificity domain	Domain
C	IPR036866	Ribonuclease Z/Hydroxyacylglutathione hydrolase-like	Homologous Superfamily
B	IPR027074	Integrator complex subunit 9	Family
B	IPR001279	Metallo-beta-lactamase	Domain
B	IPR022712	Beta-Casp domain	Domain
B	IPR036866	Ribonuclease Z/Hydroxyacylglutathione hydrolase-like	Homologous Superfamily
B	IPR048660	Integrator complex subunit 9-like, C-terminal domain	Domain
A	IPR016024	Armadillo-type fold	Homologous Superfamily
A	IPR011989	Armadillo-like helical	Homologous Superfamily
A	IPR038904	BRCA1-associated ATM activator 1	Family
A	IPR000357	HEAT repeat	Repeat

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
D	Pharos: Q96HW7	prostate cancer large cell medulloblastoma medulloblastoma Prostatic Neoplasms osteosarcoma Sjogren syndrome
C	Pharos: Q5TA45	astrocytic tumor ulcerative colitis inflammatory bowel disease oligodendroglioma
B	Pharos: Q9NV88	astrocytic tumor medulloblastoma osteosarcoma
A	Pharos: Q6PJG6	lethal neonatal spasticity-epileptic encephalopathy syndrome breast carcinoma intellectual disability epilepsy Epileptic encephalopathy lung adenocarcinoma