8QP7 | pdb_00008qp7

Crystal structure of Hepatitis C Virus E2 glycoprotein epitopeI 411-424 scaffold design 4CIL_04

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	E set domains	8055069	3000070	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	DNA_topoisoIV	e8qp7A01	A: a/b three-layered sandwiches	X: ATP-grasp_6	H: ATP-grasp_6	T: ATP-grasp_6	F: DNA_topoisoIV	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF12799	Leucine Rich repeats (2 copies) (LRR_4)	Leucine Rich repeats (2 copies)	-	Repeat
A	PF08191	LRR adjacent (LRR_adjacent)	LRR adjacent	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Yop effector YopM,Internalin B	binding lipid binding heparin binding glycosaminoglycan binding carbohydrate derivative binding sulfur compound binding	-	cellular anatomical structure extracellular region cell periphery plasma membrane membrane external encapsulating structure cell wall peptidoglycan-based cell wall intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR025875	Leucine rich repeat 4	Repeat
A	IPR025987	GW domain	Domain
A	IPR013378	Internalin B-like, B-repeat	Repeat
A	IPR001611	Leucine-rich repeat	Repeat
A	IPR038200	GW domain superfamily	Homologous Superfamily
A	IPR012569	Internalin, Ig-like inter-repeat region	Domain
A	IPR024634	Internalin, N-terminal	Domain
A	IPR042229	Listeria-Bacteroides repeat domain superfamily	Homologous Superfamily
A	IPR003591	Leucine-rich repeat, typical subtype	Repeat
A	IPR032675	Leucine-rich repeat domain superfamily	Homologous Superfamily
A	IPR014756	Immunoglobulin E-set	Homologous Superfamily
A	IPR014755	Copper resistance protein CopC/internalin, immunoglobulin-like	Homologous Superfamily
A	IPR050836	SDS22/Internalin LRR-containing	Family
A	IPR051071	Leucine-rich repeat-containing bacterial E3 ubiquitin ligases	Family
A	IPR032675	Leucine-rich repeat domain superfamily	Homologous Superfamily
A	IPR001611	Leucine-rich repeat	Repeat
A	IPR032674	LRR-containing bacterial E3 ligase, N-terminal	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.