8QCQ

B. subtilis ApdA-stalled ribosomal complex


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth 0]SCOP2B SuperfamilyZn-binding ribosomal proteins8081585 3001320 SCOP2B (2022-06-29)
J [auth D]SCOP2B SuperfamilyTranslational proteins8089142 3000811 SCOP2B (2022-06-29)
K [auth E]SCOP2B SuperfamilyRibosomal protein L48080694 3001146 SCOP2B (2022-06-29)
L [auth F]SCOP2B SuperfamilyRL5-like8073858 3001709 SCOP2B (2022-06-29)
N [auth J]SCOP2B SuperfamilyRibosomal protein L138066055 3001134 SCOP2B (2022-06-29)
O [auth K]SCOP2B Superfamily50S Ribosomal protein L14-like8072020 3000433 SCOP2B (2022-06-29)
P [auth L]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8070559 3001045 SCOP2B (2022-06-29)
Q [auth M]SCOP2B SuperfamilyRibosomal protein L16p/L10e8076039 3000884 SCOP2B (2022-06-29)
R [auth N]SCOP2B SuperfamilyProkaryotic ribosomal protein L178089014 3000995 SCOP2B (2022-06-29)
B [auth 1]SCOP2B SuperfamilyZn-binding ribosomal proteins8075070 3001320 SCOP2B (2022-06-29)
T [auth P]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8082419 3000334 SCOP2B (2022-06-29)
U [auth Q]SCOP2B SuperfamilyRibosomal protein L208075004 3000563 SCOP2B (2022-06-29)
V [auth R]SCOP2B Superfamilyl21p-like8082437 3002005 SCOP2B (2022-06-29)
W [auth S]SCOP2B SuperfamilyRibosomal protein L228076724 3001078 SCOP2B (2022-06-29)
X [auth T]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8077095 3000210 SCOP2B (2022-06-29)
Y [auth U]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8082505 3000334 SCOP2B (2022-06-29)
Z [auth W]SCOP2B SuperfamilyRibosomal L27 protein-like8075028 3000539 SCOP2B (2022-06-29)
AA [auth X]SCOP2B SuperfamilyL28p-like8089402 3001966 SCOP2B (2022-06-29)
BA [auth Y]SCOP2B SuperfamilyRibosomal protein L29 (L29p)8076730 3000713 SCOP2B (2022-06-29)
CA [auth Z]SCOP2B SuperfamilyRibosomal protein L30p/L7e8076285 3001378 SCOP2B (2022-06-29)
FA [auth k]SCOP2B SuperfamilyTranslational machinery components8098278 3000571 SCOP2B (2022-06-29)
GA [auth l]SCOP2B SuperfamilyNucleic acid-binding proteins8098574 3000135 SCOP2B (2022-06-29)
HA [auth o]SCOP2B SuperfamilyS15/NS1 RNA-binding domain8072617 3001284 SCOP2B (2022-06-29)
IA [auth q]SCOP2B SuperfamilyNucleic acid-binding proteins8059270 3000135 SCOP2B (2022-06-29)
D [auth 3]SCOP2B SuperfamilyL35p-like8083342 3000790 SCOP2B (2022-06-29)
OA [auth g]SCOP2B SuperfamilyRibosomal protein S78066029 3000799 SCOP2B (2022-06-29)
PA [auth i]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like8082667 3000100 SCOP2B (2022-06-29)
QA [auth j]SCOP2B SuperfamilyRibosomal protein S108098572 3001336 SCOP2B (2022-06-29)
RA [auth m]SCOP2B SuperfamilyS13-like H2TH domain8098564 3000053 SCOP2B (2022-06-29)
SA [auth n]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8052595 3000068 SCOP2B (2022-06-29)
TA [auth s]SCOP2B SuperfamilyRibosomal protein S198086056 3000686 SCOP2B (2022-06-29)
UA [auth h]SCOP2B SuperfamilyRibosomal protein S88079051 3000709 SCOP2B (2022-06-29)
WA [auth f]SCOP2B SuperfamilyRibosomal protein S68066497 3001323 SCOP2B (2022-06-29)
E [auth 4]SCOP2B SuperfamilyRibosomal protein L368083304 3001346 SCOP2B (2022-06-29)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 0]50S ribosomal protein L32
J [auth D]50S ribosomal protein L3
K [auth E]50S ribosomal protein L4
L [auth F]50S ribosomal protein L5
M [auth G]Large ribosomal subunit protein uL6
N [auth J]50S ribosomal protein L13
O [auth K]50S ribosomal protein L14
P [auth L]50S ribosomal protein L15
Q [auth M]50S ribosomal protein L16
R [auth N]50S ribosomal protein L17
S [auth O]50S ribosomal protein L18
B [auth 1]50S ribosomal protein L33 1
T [auth P]50S ribosomal protein L19
U [auth Q]Large ribosomal subunit protein bL20
V [auth R]50S ribosomal protein L21
W [auth S]50S ribosomal protein L22
X [auth T]Large ribosomal subunit protein uL23
Y [auth U]50S ribosomal protein L24
Z [auth W]Large ribosomal subunit protein bL27
AA [auth X]50S ribosomal protein L28
BA [auth Y]50S ribosomal protein L29
CA [auth Z]Large ribosomal subunit protein uL30
C [auth 2]50S ribosomal protein L34
DA [auth a]16S rRNA---
EA [auth e]30S ribosomal protein S5
FA [auth k]30S ribosomal protein S11
GA [auth l]30S ribosomal protein S12
HA [auth o]30S ribosomal protein S15
IA [auth q]30S ribosomal protein S17
JA [auth t]30S ribosomal protein S20
KA [auth y],
LA [auth w]
Pro-tRNA---
MA [auth 8]mRNA---
NA [auth c]Small ribosomal subunit protein uS3
D [auth 3]50S ribosomal protein L35
OA [auth g]Small ribosomal subunit protein uS7
PA [auth i]30S ribosomal protein S9
QA [auth j]30S ribosomal protein S10
RA [auth m]30S ribosomal protein S13
SA [auth n]30S ribosomal protein S14
TA [auth s]30S ribosomal protein S19
UA [auth h]30S ribosomal protein S8
VA [auth r]30S ribosomal protein S18
WA [auth f]30S ribosomal protein S6
XA [auth 7]ApdA nascent chain---
E [auth 4]50S ribosomal protein L36
F [auth 6]Large ribosomal subunit protein bL31-A
G [auth A]23S rRNA---
H [auth B]5S rRNA---
I [auth C]50S ribosomal protein L2

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth 0]IPR002677Large ribosomal subunit protein bL32Family
A [auth 0]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
A [auth 0]IPR044957Large ribosomal subunit protein bL32, bacterial typeFamily
J [auth D]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
J [auth D]IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
J [auth D]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
J [auth D]IPR000597Large ribosomal subunit protein uL3Family
K [auth E]IPR013005Large ribosomal subunit protein uL4-likeFamily
K [auth E]IPR002136Large ribosomal subunit protein uL4Family
K [auth E]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
L [auth F]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
L [auth F]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
L [auth F]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
L [auth F]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
L [auth F]IPR020930Large ribosomal subunit protein uL5, bacterial-typeFamily
L [auth F]IPR002132Large ribosomal subunit protein uL5Family
M [auth G]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
M [auth G]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
M [auth G]IPR000702Large ribosomal subunit protein uL6-likeFamily
M [auth G]IPR019906Large ribosomal subunit protein uL6, bacterial-typeFamily
M [auth G]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
N [auth J]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
N [auth J]IPR005822Large ribosomal subunit protein uL13Family
N [auth J]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
N [auth J]IPR005823Large ribosomal subunit protein uL13, bacterial-typeFamily
O [auth K]IPR005745Large ribosomal subunit protein uL14, bacterial-typeFamily
O [auth K]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
O [auth K]IPR000218Large ribosomal subunit protein uL14Family
O [auth K]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
P [auth L]IPR005749Large ribosomal subunit protein uL15, bacterial-typeFamily
P [auth L]IPR021131Large ribosomal subunit protein uL15/eL18Domain
P [auth L]IPR030878Large ribosomal subunit protein uL15Family
P [auth L]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
P [auth L]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
Q [auth M]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
Q [auth M]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
Q [auth M]IPR000114Large ribosomal subunit protein uL16, bacterial-typeFamily
Q [auth M]IPR016180Large ribosomal subunit protein uL16 domainDomain
Q [auth M]IPR047873Large ribosomal subunit protein uL16Family
R [auth N]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
R [auth N]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
R [auth N]IPR000456Large ribosomal subunit protein bL17Family
S [auth O]IPR005484Large ribosomal subunit protein uL18Family
S [auth O]IPR004389Large ribosomal subunit protein uL18, bacterial-typeFamily
B [auth 1]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
B [auth 1]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
B [auth 1]IPR001705Large ribosomal subunit protein bL33Family
B [auth 1]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
T [auth P]IPR001857Large ribosomal subunit protein bL19Family
T [auth P]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
T [auth P]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
T [auth P]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
U [auth Q]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
U [auth Q]IPR005813Large ribosomal subunit protein bL20Family
V [auth R]IPR028909Large ribosomal subunit protein bL21-likeFamily
V [auth R]IPR001787Large ribosomal subunit protein bL21Family
V [auth R]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
V [auth R]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
W [auth S]IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
W [auth S]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
W [auth S]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
W [auth S]IPR001063Large ribosomal subunit protein uL22Family
W [auth S]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
X [auth T]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
X [auth T]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
X [auth T]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
X [auth T]IPR013025Large ribosomal subunit protein uL23-likeFamily
Y [auth U]IPR003256Large ribosomal subunit protein uL24Family
Y [auth U]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
Y [auth U]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
Y [auth U]IPR005824KOWDomain
Y [auth U]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
Y [auth U]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
Z [auth W]IPR001684Large ribosomal subunit protein bL27Family
Z [auth W]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
AA [auth X]IPR001383Large ribosomal subunit protein bL28, bacterial-typeFamily
AA [auth X]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
AA [auth X]IPR026569Large ribosomal subunit protein bL28Family
AA [auth X]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
BA [auth Y]IPR001854Large ribosomal subunit protein uL29Family
BA [auth Y]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
BA [auth Y]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
CA [auth Z]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
CA [auth Z]IPR005996Large ribosomal subunit protein uL30, bacterial-typeFamily
CA [auth Z]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
CA [auth Z]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
C [auth 2]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
C [auth 2]IPR000271Large ribosomal subunit protein bL34Family
EA [auth e]IPR000851Small ribosomal subunit protein uS5Family
EA [auth e]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
EA [auth e]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
EA [auth e]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
EA [auth e]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
EA [auth e]IPR005712Small ribosomal subunit protein uS5, bacterial-typeFamily
EA [auth e]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
FA [auth k]IPR001971Small ribosomal subunit protein uS11Family
FA [auth k]IPR019981Small ribosomal subunit protein uS11, bacterial-typeFamily
FA [auth k]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
FA [auth k]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
GA [auth l]IPR006032Small ribosomal subunit protein uS12Family
GA [auth l]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
GA [auth l]IPR005679Ribosomal protein uS12, bacterial-typeFamily
HA [auth o]IPR005290Small ribosomal subunit protein uS15, bacterial-typeFamily
HA [auth o]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
HA [auth o]IPR000589Small ribosomal subunit protein uS15Family
IA [auth q]IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
IA [auth q]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
IA [auth q]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IA [auth q]IPR000266Small ribosomal subunit protein uS17Family
JA [auth t]IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
JA [auth t]IPR002583Small ribosomal subunit protein bS20Family
NA [auth c]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
NA [auth c]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
NA [auth c]IPR004087K Homology domainDomain
NA [auth c]IPR004044K Homology domain, type 2Domain
NA [auth c]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
NA [auth c]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
NA [auth c]IPR005704Small ribosomal subunit protein uS3, bacterial-typeFamily
NA [auth c]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
D [auth 3]IPR021137Large ribosomal subunit protein bL35-likeFamily
D [auth 3]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
D [auth 3]IPR001706Large ribosomal subunit protein bL35Family
D [auth 3]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
OA [auth g]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
OA [auth g]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
OA [auth g]IPR000235Small ribosomal subunit protein uS7Family
OA [auth g]IPR005717Small ribosomal subunit protein uS7, bacterial/organellar-typeFamily
OA [auth g]IPR023798Small ribosomal subunit protein uS7 domainDomain
PA [auth i]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
PA [auth i]IPR023035Small ribosomal subunit protein uS9, bacterial/plastidFamily
PA [auth i]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
PA [auth i]IPR000754Small ribosomal subunit protein uS9Family
PA [auth i]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
QA [auth j]IPR001848Small ribosomal subunit protein uS10Family
QA [auth j]IPR027486Small ribosomal subunit protein uS10 domainDomain
QA [auth j]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
QA [auth j]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
RA [auth m]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
RA [auth m]IPR001892Small ribosomal subunit protein uS13Family
RA [auth m]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
RA [auth m]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
RA [auth m]IPR019980Small ribosomal subunit protein uS13, bacterial-typeFamily
SA [auth n]IPR023053Small ribosomal subunit protein uS14, bacteriaFamily
SA [auth n]IPR001209Small ribosomal subunit protein uS14Family
SA [auth n]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
SA [auth n]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
TA [auth s]IPR002222Small ribosomal subunit protein uS19Family
TA [auth s]IPR005732Small ribosomal subunit protein uS19, bacterial-typeFamily
TA [auth s]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
TA [auth s]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
UA [auth h]IPR000630Small ribosomal subunit protein uS8Family
UA [auth h]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
UA [auth h]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
VA [auth r]IPR001648Small ribosomal subunit protein bS18Family
VA [auth r]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
VA [auth r]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
WA [auth f]IPR020815Small ribosomal subunit protein bS6, conserved siteConserved Site
WA [auth f]IPR000529Small ribosomal subunit protein bS6Family
WA [auth f]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
WA [auth f]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
WA [auth f]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
E [auth 4]IPR000473Large ribosomal subunit protein bL36Family
E [auth 4]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
F [auth 6]IPR002150Large ribosomal subunit protein bL31 type A/BFamily
F [auth 6]IPR027491Large ribosomal subunit protein bL31 type AFamily
F [auth 6]IPR042105Large ribosomal subunit protein bL31 superfamilyHomologous Superfamily
F [auth 6]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
I [auth C]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
I [auth C]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
I [auth C]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
I [auth C]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
I [auth C]IPR005880Large ribosomal subunit protein uL2, bacterial/organellar-typeFamily
I [auth C]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
I [auth C]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
I [auth C]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
I [auth C]IPR002171Large ribosomal subunit protein uL2Family