Skip to main content

 8QBY | pdb_00008qby

Respiratory complex I from Paracoccus denitrificans in MSP2N2 nanodiscs


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
I [auth D]Helicase_Ce8qbyD01 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Helicase_CECOD (v295.2)
H [auth F]Helicase_Ce8qbyF01 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Helicase_CECOD (v295.2)
G [auth H]Helicase_Ce8qbyH01 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Helicase_CECOD (v295.2)
F [auth N]Helicase_Ce8qbyN01 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Helicase_CECOD (v295.2)
EHelicase_Ce8qbyE01 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Helicase_CECOD (v295.2)
D [auth I]Helicase_Ce8qbyI01 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Helicase_CECOD (v295.2)
C [auth t]Helicase_Ce8qbyt01 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Helicase_CECOD (v295.2)
B [auth G]Helicase_Ce8qbyG01 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Helicase_CECOD (v295.2)
R [auth M]Helicase_Ce8qbyM01 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Helicase_CECOD (v295.2)
Q [auth L]Helicase_Ce8qbyL01 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Helicase_CECOD (v295.2)
P [auth B]Helicase_Ce8qbyB01 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Helicase_CECOD (v295.2)
O [auth C]Helicase_Ce8qbyC01 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Helicase_CECOD (v295.2)
N [auth Q]Helicase_Ce8qbyQ01 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Helicase_CECOD (v295.2)
M [auth R]Helicase_Ce8qbyR01 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Helicase_CECOD (v295.2)
L [auth J]Helicase_Ce8qbyJ01 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Helicase_CECOD (v295.2)
K [auth A]Helicase_Ce8qbyA01 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Helicase_CECOD (v295.2)
J [auth q]Helicase_Ce8qbyq01 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Helicase_CECOD (v295.2)
A [auth K]Helicase_Ce8qbyK01 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Helicase_CECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth D]NADH-quinone oxidoreductase subunit D -
H [auth F]NADH-quinone oxidoreductase subunit F -
G [auth H]NADH-quinone oxidoreductase subunit H
F [auth N]NADH-quinone oxidoreductase subunit N
NADH dehydrogenase subunit E -
D [auth I]NADH-quinone oxidoreductase subunit I
C [auth t]Protein-L-isoaspartate O-methyltransferase -
B [auth G]NADH-quinone oxidoreductase
R [auth M]NADH dehydrogenase subunit M
Q [auth L]NADH dehydrogenase subunit L
P [auth B]NADH-quinone oxidoreductase subunit B
O [auth C]NADH-quinone oxidoreductase subunit C -
N [auth Q]ETC complex I subunit conserved region-
M [auth R]Zinc finger CHCC-type domain-containing protein- - -
L [auth J]NADH-quinone oxidoreductase chain 10 -
K [auth A]NADH-quinone oxidoreductase subunit A -
J [auth q]NADH:ubiquinone oxidoreductase 17.2 kD subunit-
A [auth K]NADH-quinone oxidoreductase subunit K

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth D]IPR022885NAD(P)H-quinone oxidoreductase subunit D/HFamily
I [auth D]IPR014029NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved siteConserved Site
I [auth D]IPR029014[NiFe]-hydrogenase, large subunitHomologous Superfamily
I [auth D]IPR001135NADH-quinone oxidoreductase, subunit DDomain
H [auth F]IPR019575NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domainDomain
H [auth F]IPR054765SLBB domainDomain
H [auth F]IPR011537NADH ubiquinone oxidoreductase, F subunitFamily
H [auth F]IPR001949NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved siteConserved Site
H [auth F]IPR037225NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamilyHomologous Superfamily
H [auth F]IPR037207NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamilyHomologous Superfamily
H [auth F]IPR011538NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domainDomain
H [auth F]IPR050837Complex I 51 kDa subunitFamily
G [auth H]IPR001694NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit HFamily
G [auth H]IPR018086NADH:ubiquinone oxidoreductase, subunit 1, conserved siteConserved Site
F [auth N]IPR010096NAD(P)H-quinone oxidoreductase, subunit N/subunit 2Family
F [auth N]IPR001750NADH:quinone oxidoreductase/Mrp antiporter, transmembrane domainDomain
IPR042128NuoE domainDomain
IPR002023NADH-quinone oxidoreductase subunit E-likeFamily
IPR041921NADH-quinone oxidoreductase subunit E, N-terminalHomologous Superfamily
IPR036249Thioredoxin-like superfamilyHomologous Superfamily
D [auth I]IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved siteConserved Site
D [auth I]IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainDomain
D [auth I]IPR010226NADH-quinone oxidoreductase, chain IFamily
C [auth t]IPR000682Protein-L-isoaspartate(D-aspartate) O-methyltransferaseFamily
C [auth t]IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
B [auth G]IPR006963Molybdopterin oxidoreductase, 4Fe-4S domainDomain
B [auth G]IPR015405NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial-likeDomain
B [auth G]IPR006656Molybdopterin oxidoreductaseDomain
B [auth G]IPR0360102Fe-2S ferredoxin-like superfamilyHomologous Superfamily
B [auth G]IPR0010412Fe-2S ferredoxin-type iron-sulfur binding domainDomain
B [auth G]IPR000283NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved siteConserved Site
B [auth G]IPR054351NADH-ubiquinone oxidoreductase, ferredoxin-like domainDomain
B [auth G]IPR010228NADH:ubiquinone oxidoreductase, subunit GFamily
B [auth G]IPR019574NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur bindingDomain
R [auth M]IPR003918NADH:ubiquinone oxidoreductaseFamily
R [auth M]IPR010227NADH-quinone oxidoreductase, chain M/4Family
R [auth M]IPR001750NADH:quinone oxidoreductase/Mrp antiporter, transmembrane domainDomain
Q [auth L]IPR003945NADH-quinone oxidoreductase, chain 5-likeFamily
Q [auth L]IPR001516NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminalDomain
Q [auth L]IPR001750NADH:quinone oxidoreductase/Mrp antiporter, transmembrane domainDomain
Q [auth L]IPR018393NADH-plastoquinone oxidoreductase, chain 5 subgroupFamily
P [auth B]IPR006138NADH-ubiquinone oxidoreductase, 20 Kd subunitFamily
P [auth B]IPR006137NADH:ubiquinone oxidoreductase-like, 20kDa subunitDomain
O [auth C]IPR037232NADH:ubiquinone oxidoreductase, 30kDa subunit superfamilyHomologous Superfamily
O [auth C]IPR001268NADH:ubiquinone oxidoreductase, 30kDa subunitDomain
O [auth C]IPR020396NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved siteConserved Site
O [auth C]IPR010218NADH dehydrogenase, subunit CFamily
N [auth Q]IPR038532NADH dehydrogenase ubiquinone Fe-S protein 4-like superfamilyHomologous Superfamily
N [auth Q]IPR006885NADH dehydrogenase ubiquinone Fe-S protein 4 mitochondrial-likeFamily
M [auth R]IPR019401Zinc finger, CHCC-typeDomain
L [auth J]IPR042106NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJHomologous Superfamily
L [auth J]IPR001457NADH:ubiquinone/plastoquinone oxidoreductase, chain 6Family
K [auth A]IPR023043NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastidFamily
K [auth A]IPR000440NADH:ubiquinone/plastoquinone oxidoreductase, chain 3Family
K [auth A]IPR038430NADH:ubiquinone oxidoreductase, subunit 3 superfamilyHomologous Superfamily
J [auth q]IPR007763NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12Family
A [auth K]IPR001133NADH-ubiquinone oxidoreductase chain 4L/KFamily
A [auth K]IPR039428NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-likeFamily

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
I [auth D]2MR Parent Component: ARG

:  AA0067

:  symmetric dimethyl-L-arginine MOD:00076
K [auth A]FME Parent Component: MET

:  AA0067 , AA0021 , AA0566

:  symmetric dimethyl-L-arginine MOD:00076 , N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891