8QBT

E. coli ApdP-stalled ribosomal complex


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
J [auth K]SCOP2B Superfamily50S Ribosomal protein L14-like8103358 3000433 SCOP2B (2022-06-29)
K [auth L]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8070553 3001045 SCOP2B (2022-06-29)
M [auth N]SCOP2B SuperfamilyProkaryotic ribosomal protein L178035409 3000995 SCOP2B (2022-06-29)
N [auth O]SCOP2B SuperfamilyTranslational machinery components8032969 3000571 SCOP2B (2022-06-29)
O [auth P]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8096364 3000334 SCOP2B (2022-06-29)
P [auth Q]SCOP2B SuperfamilyRibosomal protein L208096382 3000563 SCOP2B (2022-06-29)
Q [auth R]SCOP2B Superfamilyl21p-like8096354 3002005 SCOP2B (2022-06-29)
R [auth S]SCOP2B SuperfamilyRibosomal protein L228096336 3001078 SCOP2B (2022-06-29)
S [auth T]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8035415 3000210 SCOP2B (2022-06-29)
T [auth U]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8096358 3000334 SCOP2B (2022-06-29)
U [auth V]SCOP2B SuperfamilyRibosomal protein L25-like8042538 3001161 SCOP2B (2022-06-29)
V [auth W]SCOP2B SuperfamilyRibosomal L27 protein-like8096338 3000539 SCOP2B (2022-06-29)
W [auth X]SCOP2B SuperfamilyL28p-like8035424 3001966 SCOP2B (2022-06-29)
X [auth Y]SCOP2B SuperfamilyRibosomal protein L29 (L29p)8096370 3000713 SCOP2B (2022-06-29)
Y [auth Z]SCOP2B SuperfamilyRibosomal protein L30p/L7e8096372 3001378 SCOP2B (2022-06-29)
Z [auth a]SCOP2B SuperfamilyZn-binding ribosomal proteins8096380 3001320 SCOP2B (2022-06-29)
AA [auth b]SCOP2B SuperfamilyZn-binding ribosomal proteins8096362 3001320 SCOP2B (2022-06-29)
CA [auth d]SCOP2B SuperfamilyL35p-like8035388 3000790 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8035393 3000334 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyNucleic acid-binding proteins8035394 3000135 SCOP2B (2022-06-29)
EA [auth j]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like8063838 3001397 SCOP2B (2022-06-29)
GA [auth n]SCOP2B SuperfamilyRibosomal protein S68066495 3001323 SCOP2B (2022-06-29)
HA [auth o]SCOP2B SuperfamilyRibosomal protein S78077979 3000799 SCOP2B (2022-06-29)
IA [auth p]SCOP2B SuperfamilyRibosomal protein S88079059 3000709 SCOP2B (2022-06-29)
JA [auth q]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like8082661 3000100 SCOP2B (2022-06-29)
MA [auth u]SCOP2B SuperfamilyS13-like H2TH domain8098358 3000053 SCOP2B (2022-06-29)
NA [auth v]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8052568 3000068 SCOP2B (2022-06-29)
OA [auth w]SCOP2B SuperfamilyS15/NS1 RNA-binding domain8032375 3001284 SCOP2B (2022-06-29)
PA [auth y]SCOP2B SuperfamilyNucleic acid-binding proteins8059276 3000135 SCOP2B (2022-06-29)
RA [auth 1]SCOP2B SuperfamilyRibosomal protein S198103915 3000686 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyRibosomal protein L48096356 3001146 SCOP2B (2022-06-29)
YA [auth e]SCOP2B SuperfamilyRibosomal protein L368035391 3001346 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyRL5-like8096352 3001709 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyRibosomal protein L68035397 3000724 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyRibosomal protein L68035398 3000724 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyL9 N-domain-like8032960 3000338 SCOP2B (2022-06-29)
I [auth J]SCOP2B SuperfamilyRibosomal protein L138096350 3001134 SCOP2B (2022-06-29)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
23S rRNA---
J [auth K]Large ribosomal subunit protein uL14
K [auth L]50S ribosomal protein L15
L [auth M]50S ribosomal protein L16
M [auth N]Large ribosomal subunit protein bL17
N [auth O]Large ribosomal subunit protein uL18
O [auth P]Large ribosomal subunit protein bL19
P [auth Q]Large ribosomal subunit protein bL20
Q [auth R]Large ribosomal subunit protein bL21
R [auth S]Large ribosomal subunit protein uL22
S [auth T]Large ribosomal subunit protein uL23
5S rRNA---
T [auth U]Large ribosomal subunit protein uL24
U [auth V]50S ribosomal protein L25
V [auth W]Large ribosomal subunit protein bL27
W [auth X]Large ribosomal subunit protein bL28
X [auth Y]Large ribosomal subunit protein uL29
Y [auth Z]Large ribosomal subunit protein uL30
Z [auth a]Large ribosomal subunit protein bL32
AA [auth b]Large ribosomal subunit protein bL33
BA [auth c]Large ribosomal subunit protein bL34
CA [auth d]Large ribosomal subunit protein bL35
Large ribosomal subunit protein uL2
DA [auth i]16S rRNA---
EA [auth j]30S ribosomal protein S2
FA [auth m]Small ribosomal subunit protein uS5
GA [auth n]30S ribosomal protein S6, fully modified isoform
HA [auth o]30S ribosomal protein S7
IA [auth p]Small ribosomal subunit protein uS8
JA [auth q]Small ribosomal subunit protein uS9
KA [auth s]30S ribosomal protein S11---
LA [auth t]30S ribosomal protein S12
MA [auth u]Small ribosomal subunit protein uS13
50S ribosomal protein L3
NA [auth v]Small ribosomal subunit protein uS14
OA [auth w]Small ribosomal subunit protein uS15
PA [auth y]Small ribosomal subunit protein uS17
QA [auth z]Small ribosomal subunit protein bS18
RA [auth 1]Small ribosomal subunit protein uS19
SA [auth 2]30S ribosomal protein S20
TA [auth 3]Small ribosomal subunit protein bS21
UA [auth 4]mRNA---
VA [auth 5],
WA [auth 6]
Pro-tRNA---
XA [auth 7]Ala-tRNA---
Large ribosomal subunit protein uL4
YA [auth e]Large ribosomal subunit protein bL36A
ZA [auth f]ApdP nascent chain---
Large ribosomal subunit protein uL5
Large ribosomal subunit protein uL6
Large ribosomal subunit protein bL9
I [auth J]Large ribosomal subunit protein uL13

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
J [auth K]IPR005745Large ribosomal subunit protein uL14, bacterial-typeFamily
J [auth K]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
J [auth K]IPR000218Large ribosomal subunit protein uL14Family
J [auth K]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
K [auth L]IPR005749Large ribosomal subunit protein uL15, bacterial-typeFamily
K [auth L]IPR021131Large ribosomal subunit protein uL15/eL18Domain
K [auth L]IPR030878Large ribosomal subunit protein uL15Family
K [auth L]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
K [auth L]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
L [auth M]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
L [auth M]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
L [auth M]IPR000114Large ribosomal subunit protein uL16, bacterial-typeFamily
L [auth M]IPR016180Large ribosomal subunit protein uL16 domainDomain
L [auth M]IPR047873Large ribosomal subunit protein uL16Family
M [auth N]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
M [auth N]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
M [auth N]IPR000456Large ribosomal subunit protein bL17Family
N [auth O]IPR005484Large ribosomal subunit protein uL18Family
N [auth O]IPR004389Large ribosomal subunit protein uL18, bacterial-typeFamily
O [auth P]IPR001857Large ribosomal subunit protein bL19Family
O [auth P]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
O [auth P]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
O [auth P]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
P [auth Q]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
P [auth Q]IPR005813Large ribosomal subunit protein bL20Family
Q [auth R]IPR028909Large ribosomal subunit protein bL21-likeFamily
Q [auth R]IPR001787Large ribosomal subunit protein bL21Family
Q [auth R]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
Q [auth R]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
R [auth S]IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
R [auth S]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
R [auth S]IPR001063Large ribosomal subunit protein uL22Family
R [auth S]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
R [auth S]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
S [auth T]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
S [auth T]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
S [auth T]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
S [auth T]IPR013025Large ribosomal subunit protein uL23-likeFamily
T [auth U]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
T [auth U]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
T [auth U]IPR003256Large ribosomal subunit protein uL24Family
T [auth U]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
T [auth U]IPR005824KOWDomain
T [auth U]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
U [auth V]IPR020055Ribosomal protein bL25, short-formFamily
U [auth V]IPR029751Large ribosomal subunit protein bL25, L25 domainDomain
U [auth V]IPR020056Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminalHomologous Superfamily
U [auth V]IPR011035Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyHomologous Superfamily
V [auth W]IPR001684Large ribosomal subunit protein bL27Family
V [auth W]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
W [auth X]IPR001383Large ribosomal subunit protein bL28, bacterial-typeFamily
W [auth X]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
W [auth X]IPR026569Large ribosomal subunit protein bL28Family
W [auth X]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
X [auth Y]IPR001854Large ribosomal subunit protein uL29Family
X [auth Y]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
X [auth Y]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
Y [auth Z]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
Y [auth Z]IPR005996Large ribosomal subunit protein uL30, bacterial-typeFamily
Y [auth Z]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
Y [auth Z]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
Z [auth a]IPR002677Large ribosomal subunit protein bL32Family
Z [auth a]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
Z [auth a]IPR044957Large ribosomal subunit protein bL32, bacterial typeFamily
AA [auth b]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
AA [auth b]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
AA [auth b]IPR001705Large ribosomal subunit protein bL33Family
AA [auth b]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
BA [auth c]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
BA [auth c]IPR000271Large ribosomal subunit protein bL34Family
CA [auth d]IPR021137Large ribosomal subunit protein bL35-likeFamily
CA [auth d]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
CA [auth d]IPR001706Large ribosomal subunit protein bL35Family
CA [auth d]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
IPR005880Large ribosomal subunit protein uL2, bacterial/organellar-typeFamily
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
IPR002171Large ribosomal subunit protein uL2Family
EA [auth j]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
EA [auth j]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
EA [auth j]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
EA [auth j]IPR001865Small ribosomal subunit protein uS2Family
FA [auth m]IPR000851Small ribosomal subunit protein uS5Family
FA [auth m]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
FA [auth m]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
FA [auth m]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
FA [auth m]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
FA [auth m]IPR005712Small ribosomal subunit protein uS5, bacterial-typeFamily
FA [auth m]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
GA [auth n]IPR020815Small ribosomal subunit protein bS6, conserved siteConserved Site
GA [auth n]IPR000529Small ribosomal subunit protein bS6Family
GA [auth n]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
GA [auth n]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
GA [auth n]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
HA [auth o]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
HA [auth o]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
HA [auth o]IPR000235Small ribosomal subunit protein uS7Family
HA [auth o]IPR005717Small ribosomal subunit protein uS7, bacterial/organellar-typeFamily
HA [auth o]IPR023798Small ribosomal subunit protein uS7 domainDomain
IA [auth p]IPR000630Small ribosomal subunit protein uS8Family
IA [auth p]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
IA [auth p]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
JA [auth q]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
JA [auth q]IPR023035Small ribosomal subunit protein uS9, bacterial/plastidFamily
JA [auth q]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
JA [auth q]IPR000754Small ribosomal subunit protein uS9Family
JA [auth q]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
LA [auth t]IPR006032Small ribosomal subunit protein uS12Family
LA [auth t]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
LA [auth t]IPR005679Ribosomal protein uS12, bacterial-typeFamily
MA [auth u]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
MA [auth u]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
MA [auth u]IPR001892Small ribosomal subunit protein uS13Family
MA [auth u]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
MA [auth u]IPR019980Small ribosomal subunit protein uS13, bacterial-typeFamily
IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
IPR000597Large ribosomal subunit protein uL3Family
NA [auth v]IPR001209Small ribosomal subunit protein uS14Family
NA [auth v]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
NA [auth v]IPR023036Small ribosomal subunit protein uS14, bacteria/plastidFamily
OA [auth w]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
OA [auth w]IPR000589Small ribosomal subunit protein uS15Family
OA [auth w]IPR005290Small ribosomal subunit protein uS15, bacterial-typeFamily
PA [auth y]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
PA [auth y]IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
PA [auth y]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
PA [auth y]IPR000266Small ribosomal subunit protein uS17Family
QA [auth z]IPR001648Small ribosomal subunit protein bS18Family
QA [auth z]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
QA [auth z]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
RA [auth 1]IPR002222Small ribosomal subunit protein uS19Family
RA [auth 1]IPR005732Small ribosomal subunit protein uS19, bacterial-typeFamily
RA [auth 1]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
RA [auth 1]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
SA [auth 2]IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
SA [auth 2]IPR002583Small ribosomal subunit protein bS20Family
TA [auth 3]IPR038380Small ribosomal subunit protein bS21 superfamilyHomologous Superfamily
TA [auth 3]IPR018278Small ribosomal subunit protein bS21, conserved siteConserved Site
TA [auth 3]IPR001911Small ribosomal subunit protein bS21Family
IPR013005Large ribosomal subunit protein uL4-likeFamily
IPR002136Large ribosomal subunit protein uL4Family
IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
YA [auth e]IPR000473Large ribosomal subunit protein bL36Family
YA [auth e]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
IPR020930Large ribosomal subunit protein uL5, bacterial-typeFamily
IPR002132Large ribosomal subunit protein uL5Family
IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
IPR019906Large ribosomal subunit protein uL6, bacterial-typeFamily
IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
IPR000702Large ribosomal subunit protein uL6-likeFamily
IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
IPR020069Large ribosomal subunit protein bL9, C-terminalDomain
IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
IPR020594Large ribosomal subunit protein bL9, bacteria/chloroplastFamily
IPR036791Large ribosomal subunit protein bL9, C-terminal domain superfamilyHomologous Superfamily
IPR000244Large ribosomal subunit protein bL9Family
I [auth J]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
I [auth J]IPR005822Large ribosomal subunit protein uL13Family
I [auth J]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
I [auth J]IPR005823Large ribosomal subunit protein uL13, bacterial-typeFamily