8Q72 | pdb_00008q72

E. coli plasmid-borne JetABCD(E248A) core in a cleavage-competent state

External Resource: Annotation

Protein Family Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
K [auth M], L [auth N]	PF11795	Uncharacterized protein conserved in bacteria N-term (DUF3322) (DUF3322)	Uncharacterized protein conserved in bacteria N-term (DUF3322)	This domain, found in various hypothetical bacterial proteins, has no known function. The family represents just the N-terminus.	Domain
E, J	PF11855	Protein of unknown function (DUF3375) (DUF3375)	Protein of unknown function (DUF3375)	-	Family
C, D, H, I	PF13835	Domain of unknown function (DUF4194) (DUF4194)	Domain of unknown function (DUF4194)	-	Family
A, B, F, G	PF13558	SbcC/RAD50-like, Walker B motif (SbcC_Walker_B)	SbcC/RAD50-like, Walker B motif	This entry represents the Walker B domain of RAD50 from eukaryotes and the prokaryotic homologue SbcCD complex subunit C. RAD50-ATPase forms a complex with Mre11-nuclease that detects and processes diverse and obstructed DNA ends. This domain is sepa ...	This entry represents the Walker B domain of RAD50 from eukaryotes and the prokaryotic homologue SbcCD complex subunit C. RAD50-ATPase forms a complex with Mre11-nuclease that detects and processes diverse and obstructed DNA ends. This domain is separated of the Walker A domain by a long coiled-coil domain and forms the nucleotide-binding domain (NBD) when the coiled coils fold back on themselves and bring together Walker A and B domains [1,2,3,4]. Two RAD50-NBDs forms heterotetramers with a Mre11 nuclease dimer that assemble as catalytic head module that binds and cleaves DNA in an ATP-dependent reaction. Through secondary structural analysis, it has been suggested that there is a wide structural conservation in the Rad50/SMC protein family as seen in structural similarities between RAD50's hook and ABC-ATPase MukB's elbow region [4].	Domain
A, B, F, G	PF13555	P-loop containing region of AAA domain (AAA_29)	P-loop containing region of AAA domain		Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
K [auth M], L [auth N]	IPR014544	Uncharacterised conserved protein UCP028408	Family
K [auth M], L [auth N]	IPR024534	Wadjet protein JetD, C-terminal	Domain
K [auth M], L [auth N]	IPR024537	Domain of unknown function DUF3322	Domain
E, J	IPR021804	Protein of unknown function DUF3375	Family
C, D, H, I	IPR025449	Wadjet protein JetB	Family
A, B, F, G	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.