8Q16 | pdb_00008q16

CryoEM structure of rice nucleosome containing a H4 variant chimera

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF16211	C-terminus of histone H2A (Histone_H2A_C)	C-terminus of histone H2A	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
J	WIDOM 601	-	-	-
I	WIDOM 601	-	-	-
G, H	Chimeric H4.V	DNA binding binding nucleic acid binding protein heterodimerization activity protein binding protein dimerization activity structural molecule activity structural constituent of chromatin	-	protein-containing complex intracellular anatomical structure protein-DNA complex nucleosome intracellular membraneless organelle chromatin chromosome intracellular organelle cellular anatomical structure organelle membraneless organelle membrane-bounded organelle nucleus intracellular membrane-bounded organelle
E, F	Histone H3.2	DNA binding binding nucleic acid binding protein heterodimerization activity protein binding protein dimerization activity structural molecule activity structural constituent of chromatin	-	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle chromocenter protein-containing complex protein-DNA complex nucleosome chromatin chromosome membrane-bounded organelle nucleus intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle chromocenter protein-containing complex protein-DNA complex nucleosome chromatin chromosome membrane-bounded organelle nucleus intracellular membrane-bounded organelle
C, D	Histone H2B.4	DNA binding binding nucleic acid binding protein heterodimerization activity protein binding protein dimerization activity structural molecule activity structural constituent of chromatin	-	protein-containing complex intracellular anatomical structure protein-DNA complex nucleosome intracellular membraneless organelle chromatin chromosome intracellular organelle cellular anatomical structure organelle membraneless organelle membrane-bounded organelle nucleus intracellular membrane-bounded organelle
A, B	Histone H2A.2	DNA binding binding nucleic acid binding protein heterodimerization activity protein binding protein dimerization activity structural molecule activity structural constituent of chromatin	-	protein-containing complex intracellular anatomical structure protein-DNA complex nucleosome intracellular membraneless organelle chromatin chromosome intracellular organelle cellular anatomical structure organelle membraneless organelle membrane-bounded organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
G, H	IPR009072	Histone-fold	Homologous Superfamily
G, H	IPR001951	Histone H4	Family
E, F	IPR009072	Histone-fold	Homologous Superfamily
E, F	IPR000164	Histone H3/CENP-A	Family
E, F	IPR007125	Core Histone H2A/H2B/H3 domain	Domain
C, D	IPR009072	Histone-fold	Homologous Superfamily
C, D	IPR055333	Histone H2B, conserved site	Conserved Site
C, D	IPR000558	Histone H2B	Family
C, D	IPR007125	Core Histone H2A/H2B/H3 domain	Domain
A, B	IPR009072	Histone-fold	Homologous Superfamily
A, B	IPR002119	Histone H2A	Family
A, B	IPR032454	Histone H2A, C-terminal domain	Domain
A, B	IPR032458	Histone H2A conserved site	Conserved Site
A, B	IPR007125	Core Histone H2A/H2B/H3 domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.