Structure of immature HTLV-1 CA-NTD from in vitro assembled MA126-CANC tubes: axis angle -15 degrees
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| C | HIG_1_N | e8pu8C1 | A: a/b three-layered sandwiches | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: HIG_1_N | ECOD (v294.1) |
| B | HIG_1_N | e8pu8B1 | A: a/b three-layered sandwiches | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: HIG_1_N | ECOD (v294.1) |
| A | HIG_1_N | e8pu8A1 | A: a/b three-layered sandwiches | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: HIG_1_N | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| C | 1.10.375.10 | Mainly Alpha | Orthogonal Bundle | Human Immunodeficiency Virus Type 1 Capsid Protein | Human Immunodeficiency Virus Type 1 Capsid Protein | CATH (utative) |
| B | 1.10.375.10 | Mainly Alpha | Orthogonal Bundle | Human Immunodeficiency Virus Type 1 Capsid Protein | Human Immunodeficiency Virus Type 1 Capsid Protein | CATH (utative) |
| A | 1.10.375.10 | Mainly Alpha | Orthogonal Bundle | Human Immunodeficiency Virus Type 1 Capsid Protein | Human Immunodeficiency Virus Type 1 Capsid Protein | CATH (utative) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| Gag protein (Fragment) |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR045345 | Retroviral nucleocapsid Gag protein p24, C-terminal domain | Domain | |
| IPR036875 | Zinc finger, CCHC-type superfamily | Homologous Superfamily | |
| IPR050195 | Primate lentivirus group Gag polyprotein-like | Domain | |
| IPR003139 | Delta-retroviral matrix protein | Domain | |
| IPR001878 | Zinc finger, CCHC-type | Domain | |
| IPR008919 | Retrovirus capsid, N-terminal | Homologous Superfamily | |
| IPR010999 | Retroviral matrix protein | Homologous Superfamily | |
| IPR008916 | Retrovirus capsid, C-terminal | Homologous Superfamily |
