8PPL
MERS-CoV Nsp1 bound to the human 43S pre-initiation complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth I3] | SCOP2B Superfamily | ARM repeat-like | 8002866 | 3000116 | SCOP2B (2022-06-29) |
A [auth I3] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8002864 | 3000034 | SCOP2B (2022-06-29) |
B [auth I4] | SCOP2B Superfamily | JAB1/MPN domain-like | 8053242 | 3001105 | SCOP2B (2022-06-29) |
B [auth I4] | SCOP2B Superfamily | EIF3 subunit F C-terminal domain-like | 8053241 | 3002167 | SCOP2B (2022-06-29) |
F [auth Io] | SCOP2B Superfamily | RNA-binding domain RBD | 8039192 | 3000110 | SCOP2B (2022-06-29) |
G [auth Ip] | SCOP2B Superfamily | eIF1-like | 8035729 | 3001441 | SCOP2B (2022-06-29) |
M [auth Iv] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8091486 | 3000034 | SCOP2B (2022-06-29) |
M [auth Iv] | SCOP2B Superfamily | TPR-like | 8091483 | 3001345 | SCOP2B (2022-06-29) |
P [auth Iy] | SCOP2B Superfamily | TPR-like | 8093044 | 3001345 | SCOP2B (2022-06-29) |
P [auth Iy] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8093051 | 3000034 | SCOP2B (2022-06-29) |
R [auth AA] | SCOP2B Superfamily | SIS domain/Ribosomal protein S2-like | 8052791 | 3001397 | SCOP2B (2022-06-29) |
U [auth AD] | SCOP2B Superfamily | Prokaryotic type KH domain (KH-domain type II) | 8043545 | 3001043 | SCOP2B (2022-06-29) |
X [auth AG] | SCOP2B Superfamily | GS N-terminal domain-like | 8053171 | 3000408 | SCOP2B (2022-06-29) |
Z [auth AI] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8053077 | 3000433 | SCOP2B (2022-06-29) |
BA [auth AK] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8055714 | 3000034 | SCOP2B (2022-06-29) |
CA [auth AL] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8052717 | 3000135 | SCOP2B (2022-06-29) |
CA [auth AL] | SCOP2B Superfamily | Ribosomal S17 N-terminal domain-like | 8052715 | 3002138 | SCOP2B (2022-06-29) |
DA [auth AM] | SCOP2B Superfamily | L30e-like | 8063978 | 3001739 | SCOP2B (2022-06-29) |
EA [auth AN] | SCOP2B Superfamily | S15/NS1 RNA-binding domain | 8052959 | 3001284 | SCOP2B (2022-06-29) |
EA [auth AN] | SCOP2B Superfamily | Homeodomain-like | 8052958 | 3000001 | SCOP2B (2022-06-29) |
FA [auth AO] | SCOP2B Superfamily | Translational machinery components | 8098844 | 3000571 | SCOP2B (2022-06-29) |
HA [auth AQ] | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8082685 | 3000100 | SCOP2B (2022-06-29) |
JA [auth AS] | SCOP2B Superfamily | S13-like H2TH domain | 8101555 | 3000053 | SCOP2B (2022-06-29) |
KA [auth AT] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8089318 | 3000034 | SCOP2B (2022-06-29) |
LA [auth AU] | SCOP2B Superfamily | Ribosomal protein S10 | 8098806 | 3001336 | SCOP2B (2022-06-29) |
MA [auth AV] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8053139 | 3000068 | SCOP2B (2022-06-29) |
NA [auth AW] | SCOP2B Superfamily | Ribosomal protein S8 | 8095469 | 3000709 | SCOP2B (2022-06-29) |
QA [auth AZ] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8090992 | 3000034 | SCOP2B (2022-06-29) |
RA [auth Aa] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8053143 | 3000068 | SCOP2B (2022-06-29) |
TA [auth Ac] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8063426 | 3000135 | SCOP2B (2022-06-29) |
UA [auth Ad] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8052572 | 3000068 | SCOP2B (2022-06-29) |
VA [auth Ae] | SCOP2B Superfamily | Ribosomal protein S30e-like | 8053453 | 3002190 | SCOP2B (2022-06-29) |
S [auth AB] | SCOP2B Superfamily | Ribosomal S3Ae-like | 8053212 | 3002166 | SCOP2B (2022-06-29) |
V [auth AE] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8052757 | 3000334 | SCOP2B (2022-06-29) |
V [auth AE] | SCOP2B Superfamily | Alpha-L RNA-binding motif | 8052755 | 3001473 | SCOP2B (2022-06-29) |
V [auth AE] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8052756 | 3000135 | SCOP2B (2022-06-29) |
W [auth AF] | SCOP2B Superfamily | Ribosomal protein S7 | 8066003 | 3000799 | SCOP2B (2022-06-29) |
E [auth I8] | SCOP2B Superfamily | JAB1/MPN domain-like | 8053284 | 3001105 | SCOP2B (2022-06-29) |
I [auth Ir] | SCOP2B Superfamily | eIF-2-alpha C-terminal domain | 8038509 | 3001618 | SCOP2B (2022-06-29) |
I [auth Ir] | SCOP2B Superfamily | eIF2alpha middle domain-like | 8042150 | 3001761 | SCOP2B (2022-06-29) |
I [auth Ir] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8042151 | 3000135 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth I3] | PF10075 | e8pplI32 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF10075 | ECOD (1.6) |
A [auth I3] | PF10075 | e8pplI31 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF10075 | ECOD (1.6) |
B [auth I4] | PF01398 | e8pplI41 | A: a+b three layers | X: Cytidine deaminase-like (From Topology) | H: Cytidine deaminase-like (From Topology) | T: Cytidine deaminase-like | F: PF01398 | ECOD (1.6) |
B [auth I4] | PF13012 | e8pplI42 | A: extended segments | X: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology) | H: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology) | T: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain | F: PF13012 | ECOD (1.6) |
F [auth Io] | PF00076 | e8pplIo1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: PF00076 | ECOD (1.6) |
G [auth Ip] | PF01253 | e8pplIp1 | A: a+b two layers | X: Glucose permease domain IIB-like | H: eIF1-like (From Topology) | T: eIF1-like | F: PF01253 | ECOD (1.6) |
J [auth Is] | PF01873 | e8pplIs1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF01873 | ECOD (1.6) |
J [auth Is] | PF01873 | e8pplIs2 | A: few secondary structure elements | X: Rubredoxin-like | H: Zinc-binding domain of translation initiation factor 2 beta (From Topology) | T: Zinc-binding domain of translation initiation factor 2 beta | F: PF01873 | ECOD (1.6) |
K [auth It] | PF03144 | e8pplIt3 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF03144 | ECOD (1.6) |
K [auth It] | PF09173 | e8pplIt4 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Aminomethyltransferase beta-barrel domain | F: PF09173 | ECOD (1.6) |
K [auth It] | PF00009 | e8pplIt1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00009 | ECOD (1.6) |
K [auth It] | F_UNCLASSIFIED | e8pplIt2 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: F_UNCLASSIFIED | ECOD (1.6) |
M [auth Iv] | PF01399 | e8pplIv3 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF01399 | ECOD (1.6) |
M [auth Iv] | PF09440 | e8pplIv2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF09440 | ECOD (1.6) |
M [auth Iv] | PF21357 | e8pplIv1 | A: extended segments | X: 26S proteasome regulatory subunits C-terminal helices | H: 26S proteasome regulatory subunit RPN7 C-terminal helix (From Topology) | T: 26S proteasome regulatory subunit RPN7 C-terminal helix | F: PF21357 | ECOD (1.6) |
R [auth AA] | PF00318 | e8pplAA1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Ribosomal protein S2/SIS domain (From Topology) | T: Ribosomal protein S2/SIS domain | F: PF00318 | ECOD (1.6) |
T [auth AC] | PF03719 | e8pplAC1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: PF03719 | ECOD (1.6) |
T [auth AC] | PF00333 | e8pplAC3 | A: a+b two layers | X: dsRBD-like | H: dsRNA-binding domain-like (From Topology) | T: dsRNA-binding domain-like | F: PF00333 | ECOD (1.6) |
T [auth AC] | PF00333 | e8pplAC2 | A: extended segments | X: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology) | H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology) | T: N-terminal region in 40S ribosomal protein rpS2 (S5p) | F: PF00333 | ECOD (1.6) |
U [auth AD] | PF00189 | e8pplAD2 | A: a+b two layers | X: T-fold | H: Ribosomal protein S3-C (From Topology) | T: Ribosomal protein S3-C | F: PF00189 | ECOD (1.6) |
U [auth AD] | PF07650 | e8pplAD1 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Prokaryotic type KH domain (KH-domain type II) | F: PF07650 | ECOD (1.6) |
X [auth AG] | PF01092 | e8pplAG1 | A: beta barrels | X: Ribosomal protein L25-like | H: Ribosomal protein L25-like (From Topology) | T: Ribosomal protein L25-like | F: PF01092 | ECOD (1.6) |
Y [auth AH] | PF01251 | e8pplAH1 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: 40S ribosomal protein S7-A (From Topology) | T: 40S ribosomal protein S7-A | F: PF01251 | ECOD (1.6) |
Z [auth AI] | PF01201 | e8pplAI1 | A: beta barrels | X: Ribosomal protein L14-like | H: Ribosomal protein L14-related (From Topology) | T: Ribosomal protein L14-related | F: PF01201 | ECOD (1.6) |
AA [auth AJ] | PF00163,PF01479 | e8pplAJ1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Alpha-L RNA-binding motif | F: PF00163,PF01479 | ECOD (1.6) |
BA [auth AK] | PF03501 | e8pplAK1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF03501 | ECOD (1.6) |
CA [auth AL] | PF00366,PF16205 | e8pplAL1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00366,PF16205 | ECOD (1.6) |
DA [auth AM] | PF01248 | e8pplAM1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: PF01248 | ECOD (1.6) |
EA [auth AN] | PF08069 | e8pplAN2 | A: alpha arrays | X: HTH | H: 40S ribosomal protein S13 N-terminal domain (From Topology) | T: 40S ribosomal protein S13 N-terminal domain | F: PF08069 | ECOD (1.6) |
EA [auth AN] | PF00312 | e8pplAN1 | A: alpha arrays | X: S15/NS1 RNA-binding domain (From Topology) | H: S15/NS1 RNA-binding domain (From Topology) | T: S15/NS1 RNA-binding domain | F: PF00312 | ECOD (1.6) |
FA [auth AO] | PF00411 | e8pplAO1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF00411 | ECOD (1.6) |
GA [auth AP] | PF00203 | e8pplAP1 | A: a+b two layers | X: Ribosomal protein S19 (From Topology) | H: Ribosomal protein S19 (From Topology) | T: Ribosomal protein S19 | F: PF00203 | ECOD (1.6) |
HA [auth AQ] | PF00380 | e8pplAQ1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: PF00380 | ECOD (1.6) |
IA [auth AR] | PF00833 | e8pplAR1 | A: alpha arrays | X: HTH | H: HTH | T: FF domain | F: PF00833 | ECOD (1.6) |
JA [auth AS] | PF00416 | e8pplAS1 | A: alpha arrays | X: HhH/H2TH | H: H2TH (From Topology) | T: H2TH | F: PF00416 | ECOD (1.6) |
KA [auth AT] | PF01090 | e8pplAT1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF01090 | ECOD (1.6) |
LA [auth AU] | PF00338 | e8pplAU1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S10 (From Topology) | T: Ribosomal protein S10 | F: PF00338 | ECOD (1.6) |
MA [auth AV] | PF01249 | e8pplAV1 | A: a+b two layers | X: 40S ribosomal protein rpS21 (S21e) (From Topology) | H: 40S ribosomal protein rpS21 (S21e) (From Topology) | T: 40S ribosomal protein rpS21 (S21e) | F: PF01249 | ECOD (1.6) |
NA [auth AW] | PF00410 | e8pplAW1 | A: a+b two layers | X: R3H domain-like | H: Ribosomal protein S8, N-terminal domain (From Topology) | T: Ribosomal protein S8, N-terminal domain | F: PF00410 | ECOD (1.6) |
NA [auth AW] | PF00410 | e8pplAW2 | A: a+b two layers | X: Ribosomal protein S8, C-terminal domain (From Topology) | H: Ribosomal protein S8, C-terminal domain (From Topology) | T: Ribosomal protein S8, C-terminal domain | F: PF00410 | ECOD (1.6) |
OA [auth AX] | PF00164 | e8pplAX1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00164 | ECOD (1.6) |
PA [auth AY] | PF01282 | e8pplAY1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: PF01282 | ECOD (1.6) |
QA [auth AZ] | PF03297 | e8pplAZ1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF03297 | ECOD (1.6) |
RA [auth Aa] | PF01283 | e8pplAa1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: PF01283 | ECOD (1.6) |
SA [auth Ab] | PF01667 | e8pplAb1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF01667 | ECOD (1.6) |
TA [auth Ac] | PF01200 | e8pplAc1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF01200 | ECOD (1.6) |
UA [auth Ad] | PF00253 | e8pplAd1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: PF00253 | ECOD (1.6) |
VA [auth Ae] | PF04758 | e8pplAe1 | A: extended segments | X: 40S ribosomal protein S30 (S30e) (From Topology) | H: 40S ribosomal protein S30 (S30e) (From Topology) | T: 40S ribosomal protein S30 (S30e) | F: PF04758 | ECOD (1.6) |
WA [auth Af] | PF01599 | e8pplAf1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF01599 | ECOD (1.6) |
XA [auth Ag] | PF00400 | e8pplAg1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF00400 | ECOD (1.6) |
YA [auth Ah] | PF05162 | e8pplAh1 | A: extended segments | X: Ribosomal protein L41-A (From Topology) | H: Ribosomal protein L41-A (From Topology) | T: Ribosomal protein L41-A | F: PF05162 | ECOD (1.6) |
S [auth AB] | PF01015 | e8pplAB2 | A: beta barrels | X: Ribosomal protein L25-like | H: 40S ribosomal protein S3A N-terminal domain (From Topology) | T: 40S ribosomal protein S3A N-terminal domain | F: PF01015 | ECOD (1.6) |
S [auth AB] | PF01015 | e8pplAB1 | A: a+b two layers | X: T-fold | H: 40S ribosomal protein S3A C-terminal domain (From Topology) | T: 40S ribosomal protein S3A C-terminal domain | F: PF01015 | ECOD (1.6) |
V [auth AE] | PF00900 | e8pplAE1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00900 | ECOD (1.6) |
V [auth AE] | PF00467,PF16121 | e8pplAE2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF00467,PF16121 | ECOD (1.6) |
V [auth AE] | PF00900,PF01479,PF08071 | e8pplAE3 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Alpha-L RNA-binding motif | F: PF00900,PF01479,PF08071 | ECOD (1.6) |
W [auth AF] | PF00177 | e8pplAF1 | A: alpha arrays | X: Ribosomal protein S7 (From Topology) | H: Ribosomal protein S7 (From Topology) | T: Ribosomal protein S7 | F: PF00177 | ECOD (1.6) |
E [auth I8] | PF01398,PF19445 | e8pplI82 | A: a+b three layers | X: Cytidine deaminase-like (From Topology) | H: Cytidine deaminase-like (From Topology) | T: Cytidine deaminase-like | F: PF01398,PF19445 | ECOD (1.6) |
E [auth I8] | PF19445 | e8pplI81 | A: extended segments | X: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology) | H: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain (From Topology) | T: 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain | F: PF19445 | ECOD (1.6) |
H [auth Iq] | PF01176 | e8pplIq1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF01176 | ECOD (1.6) |
I [auth Ir] | PF00575 | e8pplIr1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00575 | ECOD (1.6) |
I [auth Ir] | PF07541 | e8pplIr3 | A: alpha arrays | X: HhH/H2TH | H: eIF2alpha middle domain (From Topology) | T: eIF2alpha middle domain | F: PF07541 | ECOD (1.6) |
I [auth Ir] | PF07541 | e8pplIr2 | A: a+b two layers | X: Alpha-beta plaits | H: eIF-2-alpha, C-terminal domain (From Topology) | T: eIF-2-alpha, C-terminal domain | F: PF07541 | ECOD (1.6) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Pharos: Disease Associations Pharos Homepage Annotation
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
Q [auth A2] | 4AC | |
Q [auth A2] | 6MZ | Parent Component: A |
Q [auth A2] | A2M | Parent Component: A |
Q [auth A2] | B8N | |
Q [auth A2] | G7M | Parent Component: G |
Q [auth A2] | MA6 | Parent Component: A |
Q [auth A2] | OMC | Parent Component: C |
Q [auth A2] | OMG | Parent Component: G |
Q [auth A2] | OMU | Parent Component: U |
Q [auth A2] | PSU | Parent Component: U |
R [auth AA] | SAC | Parent Component: SER |
FA [auth AO] | IAS | |
JA [auth AS] | SAC | Parent Component: SER |
KA [auth AT] | NMM | Parent Component: ARG |
MA [auth AV] | AME | Parent Component: MET |
OA [auth AX] | HY3 | Parent Component: PRO :  AA0029 :  3-hydroxy-L-proline MOD:00038 |
N [auth Iw] | 1MA | Parent Component: A :  AA0029 |
N [auth Iw] | 1MG | Parent Component: G :  AA0029 |
N [auth Iw] | 2MG | Parent Component: G :  AA0029 |
N [auth Iw] | 5MC | Parent Component: C :  AA0029 |
N [auth Iw] | G7M | Parent Component: G :  AA0029 |
N [auth Iw] | H2U | Parent Component: U :  AA0029 |
N [auth Iw] | T6A | Parent Component: A :  AA0029 |