8PMX | pdb_00008pmx

rat HEV P domain in complex with glycan-sensitive nAb p60.12

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
D [auth L]ubiquitine8pmxL01 A: a/b three-layered sandwichesX: ATP-grasp_6H: ATP-grasp_6T: ATP-grasp_6F: ubiquitinECOD (v294.1)
C [auth H]ubiquitine8pmxH01 A: a/b three-layered sandwichesX: ATP-grasp_6H: ATP-grasp_6T: ATP-grasp_6F: ubiquitinECOD (v294.1)
Aubiquitine8pmxA01 A: a/b three-layered sandwichesX: ATP-grasp_6H: ATP-grasp_6T: ATP-grasp_6F: ubiquitinECOD (v294.1)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
D [auth L]Light ChainIGLV2 Lambdapro-secreted protein orf2 | pro-secreted protein orf2SAbDab (2026-03-27)
C [auth H]Heavy ChainIGHV1 -pro-secreted protein orf2 | pro-secreted protein orf2SAbDab (2026-03-27)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
D [auth L]Fab p60.12-LC---
C [auth H]Fab p60.12-HC---
A, B
Pro-secreted protein ORF2 -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR029053Viral coat protein subunitHomologous Superfamily
A, B
IPR004261Hepatitis E virus structural protein 2, N-terminal domainDomain
A, B
IPR048802Structural protein 2, second domainDomain
A, B
IPR048794Structural protein 2, C-terminal domainDomain