8PKP
Cryo-EM structure of the apo Anaphase-promoting complex/cyclosome (APC/C) at 3.2 Angstrom resolution
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
L [auth U] | SCOP2B Superfamily | TPR-like | 8057064 | 3001345 | SCOP2B (2022-06-29) |
M [auth V] | SCOP2B Superfamily | TPR-like | 8057064 | 3001345 | SCOP2B (2022-06-29) |
Q [auth I] | SCOP2B Superfamily | WD40 repeat-like | 8106386 | 3001694 | SCOP2B (2022-06-29) |
Q [auth I] | SCOP2B Superfamily | WD40 repeat-like | 8106386 | 3001694 | SCOP2B (2022-06-29) |
S [auth C] | SCOP2B Superfamily | RING/U-box like | 8082719 | 3000160 | SCOP2B (2022-06-29) |
C [auth G] | SCOP2B Superfamily | CDC26-like | 8053843 | 3002235 | SCOP2B (2022-06-29) |
N [auth W] | SCOP2B Superfamily | CDC26-like | 8053843 | 3002235 | SCOP2B (2022-06-29) |
D [auth H] | SCOP2B Superfamily | Anaphase-promoting complex subunit 16-like | 8053719 | 3002218 | SCOP2B (2022-06-29) |
G [auth L] | SCOP2B Superfamily | galactose-binding domain-like | 8037020 | 3000087 | SCOP2B (2022-06-29) |
H [auth M] | SCOP2B Superfamily | Anaphase-promoting complex subunit 13 | 8093172 | 3002688 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF21282 | e8pkpA3 | A: beta sandwiches | X: 26S proteasome subunit Rpn2 C-terminal domain (From Topology) | H: 26S proteasome subunit Rpn2 C-terminal domain (From Topology) | T: 26S proteasome subunit Rpn2 C-terminal domain | F: PF21282 | ECOD (1.6) |
A | PF12859 | e8pkpA2 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF12859 | ECOD (1.6) |
A | PF01851 | e8pkpA5 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Proteasome/cyclosome (PC) repeat (From Topology) | T: Proteasome/cyclosome (PC) repeat | F: PF01851 | ECOD (1.6) |
A | PF20518 | e8pkpA1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Anaphase-promoting complex subunit 1 first helical domain (From Topology) | T: Anaphase-promoting complex subunit 1 first helical domain | F: PF20518 | ECOD (1.6) |
A | PF18122 | e8pkpA4 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Anaphase-promoting complex subunit 1 second helical domain (From Topology) | T: Anaphase-promoting complex subunit 1 second helical domain | F: PF18122 | ECOD (1.6) |
L [auth U] | PF04049 | e8pkpU1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF04049 | ECOD (1.6) |
M [auth V] | F_UNCLASSIFIED | e8pkpV1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: F_UNCLASSIFIED | ECOD (1.6) |
M [auth V] | PF00515 | e8pkpV3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF00515 | ECOD (1.6) |
M [auth V] | PF04049 | e8pkpV2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF04049 | ECOD (1.6) |
O [auth Y] | F_UNCLASSIFIED | e8pkpY1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: F_UNCLASSIFIED | ECOD (1.6) |
P [auth Z] | F_UNCLASSIFIED | e8pkpZ1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: F_UNCLASSIFIED | ECOD (1.6) |
Q [auth I] | PF12894 | e8pkpI1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF12894 | ECOD (1.6) |
Q [auth I] | PF12896 | e8pkpI2 | A: alpha bundles | X: Four-helical up-and-down bundle | H: Helical bundle domain in anaphase-promoting complex subunit 4 (From Topology) | T: Helical bundle domain in anaphase-promoting complex subunit 4 | F: PF12896 | ECOD (1.6) |
R [auth N] | F_UNCLASSIFIED | e8pkpN2 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: F_UNCLASSIFIED | ECOD (1.6) |
R [auth N] | F_UNCLASSIFIED | e8pkpN4 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: F_UNCLASSIFIED | ECOD (1.6) |
R [auth N] | PF00888 | e8pkpN1 | A: a+b duplicates or obligate multimers | X: a+b domain in cullin-like proteins (From Topology) | H: a+b domain in cullin-like proteins (From Topology) | T: a+b domain in cullin-like proteins | F: PF00888 | ECOD (1.6) |
S [auth C] | PF12861 | e8pkpC1 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: PF12861 | ECOD (1.6) |
E [auth J] | PF00515,PF12895 | e8pkpJ1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF00515,PF12895 | ECOD (1.6) |
J [auth P] | PF00515,PF12895 | e8pkpP1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF00515,PF12895 | ECOD (1.6) |
K [auth Q] | PF12895 | e8pkpQ1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF12895 | ECOD (1.6) |
G [auth L] | PF03256 | e8pkpL1 | A: beta sandwiches | X: jelly-roll | H: Galactose-binding domain-like (From Topology) | T: Galactose-binding domain-like | F: PF03256 | ECOD (1.6) |
I [auth O] | PF21371 | e8pkpO1 | A: alpha arrays | X: SHQ1 C-terminal domain-like | H: Anaphase-promoting complex subunit 5 N-terminal domain (From Topology) | T: Anaphase-promoting complex subunit 5 N-terminal domain | F: PF21371 | ECOD (1.6) |
I [auth O] | PF12862 | e8pkpO2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF12862 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF20518 | Anaphase-promoting complex subunit 1 middle domain (Apc1_MidN) | Anaphase-promoting complex subunit 1 middle domain | - | Repeat | |
PF18122 | Anaphase-promoting complex sub unit 1 C-terminal domain (APC1_C) | Anaphase-promoting complex sub unit 1 C-terminal domain | This is the C-terminal domain of chain A, also known as sub-unit 1, found in anaphase-promoting complex (APC/C) present in Homo sapiens. APC/C is an ubiquitin ligase that controls chromosome segregation and mitotic exit [1]. | Domain | |
PF21282 | APC1 beta sandwich domain (APC1_3rd) | APC1 beta sandwich domain | This domain is found close to the C-terminus of the APC1 protein which is a component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the ce ... | Domain | |
L [auth U], M [auth V] | PF04049 | Anaphase promoting complex subunit 8 / Cdc23 (ANAPC8) | Anaphase promoting complex subunit 8 / Cdc23 | - | Repeat |
O [auth Y], P [auth Z] | PF13181 | Tetratricopeptide repeat (TPR_8) | Tetratricopeptide repeat | - | Repeat |
Q [auth I] | PF12896 | Anaphase-promoting complex, cyclosome, subunit 4 (ANAPC4) | Anaphase-promoting complex, cyclosome, subunit 4 | Apc4 is one of the larger of the subunits of the anaphase-promoting complex or cyclosome. This family represents the long domain downstream of the WD40 repeat/s that are present on the Apc4 subunits. The anaphase-promoting complex is a multiprotein s ... | Domain |
Q [auth I] | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain (ANAPC4_WD40) | Anaphase-promoting complex subunit 4 WD40 domain | - | Repeat |
S [auth C] | PF12861 | Anaphase-promoting complex subunit 11 RING-H2 finger (zf-ANAPC11) | Anaphase-promoting complex subunit 11 RING-H2 finger | - | Family |
B [auth D] | PF15243 | Anaphase-promoting complex subunit 15 (ANAPC15) | Anaphase-promoting complex subunit 15 | - | Family |
C [auth G], N [auth W] | PF10471 | Anaphase-promoting complex APC subunit CDC26 (ANAPC_CDC26) | Anaphase-promoting complex APC subunit CDC26 | - | Family |
D [auth H] | PF17256 | Anaphase-promoting complex, subunit 16 (ANAPC16) | Anaphase-promoting complex, subunit 16 | - | Family |
E [auth J], J [auth P] | PF12895 | Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3) | Anaphase-promoting complex, cyclosome, subunit 3 | - | Repeat |
E [auth J], J [auth P] | PF00515 | Tetratricopeptide repeat (TPR_1) | Tetratricopeptide repeat | - | Repeat |
F [auth K], K [auth Q] | PF13424 | Tetratricopeptide repeat (TPR_12) | Tetratricopeptide repeat | - | Repeat |
G [auth L] | PF03256 | Anaphase-promoting complex, subunit 10 (APC10) (ANAPC10) | Anaphase-promoting complex, subunit 10 (APC10) | - | Family |
H [auth M] | PF05839 | Apc13p protein (Apc13p) | Apc13p protein | - | Family |
I [auth O] | PF12862 | Anaphase-promoting complex subunit 5 (ANAPC5) | Anaphase-promoting complex subunit 5 | - | Repeat |
I [auth O] | PF21371 | Anaphase-promoting complex subunit 5, N-terminal domain (Apc5_N) | Anaphase-promoting complex subunit 5, N-terminal domain | This domain is found at the N-terminal end of Anaphase-promoting complex subunit 5 from humans (Apc5), a component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitos ... | Domain |