8P6P | pdb_00008p6p

Mycoplasma pneumoniae small ribosomal subunit in chloramphenicol-treated cells


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
G [auth C]SCOP2B SuperfamilyAlpha-L RNA-binding motif 8107598 3001473 SCOP2B (2022-06-29)
L [auth H]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like 8107610 3000100 SCOP2B (2022-06-29)
R [auth N]SCOP2B SuperfamilyS15/NS1 RNA-binding domain 8107606 3001284 SCOP2B (2022-06-29)
V [auth R]SCOP2B SuperfamilyRibosomal protein S19 8107622 3000686 SCOP2B (2022-06-29)
T [auth P]SCOP2B SuperfamilyNucleic acid-binding proteins 8107664 3000135 SCOP2B (2022-06-29)
Q [auth M]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8107656 3000068 SCOP2B (2022-06-29)
P [auth L]SCOP2B SuperfamilyS13-like H2TH domain 8107648 3000053 SCOP2B (2022-06-29)
O [auth K]SCOP2B SuperfamilyNucleic acid-binding proteins 8107620 3000135 SCOP2B (2022-06-29)
N [auth J]SCOP2B SuperfamilyTranslational machinery components 8107646 3000571 SCOP2B (2022-06-29)
M [auth I]SCOP2B SuperfamilyRibosomal protein S10 8107628 3001336 SCOP2B (2022-06-29)
K [auth G]SCOP2B SuperfamilyRibosomal protein S8 8107654 3000709 SCOP2B (2022-06-29)
J [auth F]SCOP2B SuperfamilyRibosomal protein S7 8107618 3000799 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
G [auth C]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
G [auth C]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
L [auth H]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
R [auth N]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15Domain
I [auth E]PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6Domain
H [auth D]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domainDomain
H [auth D]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domainDomain
F [auth B]PF07650KH domain (KH_2)KH domainDomain
F [auth B]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. Domain
E [auth A]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
W [auth S]PF01649Ribosomal protein S20 (Ribosomal_S20p)Ribosomal protein S20- Family
V [auth R]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19Domain
U [auth Q]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
T [auth P]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17Domain
S [auth O]PF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- Family
Q [auth M]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
P [auth L]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
O [auth K]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. Domain
N [auth J]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
M [auth I]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. Domain
K [auth G]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8Domain
J [auth F]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
G [auth C]30S ribosomal protein S4
L [auth H]30S ribosomal protein S9
R [auth N]30S ribosomal protein S15
I [auth E]30S ribosomal protein S6
H [auth D]30S ribosomal protein S5
F [auth B]30S ribosomal protein S3
E [auth A]30S ribosomal protein S2
D [auth 8]tRNA-Lys (A-site)---
C [auth 7]tRNA-Asp (P-site)---
Z [auth x]50S ribosomal protein L31
mRNA---
X [auth T]30S ribosomal protein S21
W [auth S]30S ribosomal protein S20
V [auth R]30S ribosomal protein S19
U [auth Q]30S ribosomal protein S18
T [auth P]30S ribosomal protein S17
B [auth 5]16S ribosomal RNA---
S [auth O]30S ribosomal protein S16
Q [auth M]30S ribosomal protein S14 type Z
P [auth L]30S ribosomal protein S13
O [auth K]30S ribosomal protein S12
N [auth J]30S ribosomal protein S11
M [auth I]30S ribosomal protein S10
K [auth G]30S ribosomal protein S8
J [auth F]30S ribosomal protein S7
A [auth 3]23S ribosomal RNA---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
G [auth C]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
G [auth C]IPR002942RNA-binding S4 domainDomain
G [auth C]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
G [auth C]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
G [auth C]IPR022801Small ribosomal subunit protein uS4Family
G [auth C]IPR005709Small ribosomal subunit protein uS4, bacteriaFamily
L [auth H]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
L [auth H]IPR023035Small ribosomal subunit protein uS9, bacteria/plastidFamily
L [auth H]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
L [auth H]IPR000754Small ribosomal subunit protein uS9Family
L [auth H]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
R [auth N]IPR005290Small ribosomal subunit protein uS15, bacteriaFamily
R [auth N]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
R [auth N]IPR000589Small ribosomal subunit protein uS15Family
I [auth E]IPR020815Small ribosomal subunit protein bS6, conserved siteConserved Site
I [auth E]IPR000529Small ribosomal subunit protein bS6Family
I [auth E]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
I [auth E]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
I [auth E]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
H [auth D]IPR005712Small ribosomal subunit protein uS5, bacteriaFamily
H [auth D]IPR000851Small ribosomal subunit protein uS5Family
H [auth D]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
H [auth D]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
H [auth D]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
H [auth D]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
H [auth D]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
F [auth B]IPR005704Small ribosomal subunit protein uS3, bacteriaFamily
F [auth B]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
F [auth B]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
F [auth B]IPR004087K Homology domainDomain
F [auth B]IPR004044K Homology domain, type 2Domain
F [auth B]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
F [auth B]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
F [auth B]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
E [auth A]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
E [auth A]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
E [auth A]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
E [auth A]IPR001865Small ribosomal subunit protein uS2Family
Z [auth x]IPR002150Large ribosomal subunit protein bL31 type A/BFamily
Z [auth x]IPR027491Large ribosomal subunit protein bL31 type AFamily
Z [auth x]IPR042105Large ribosomal subunit protein bL31 superfamilyHomologous Superfamily
Z [auth x]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
X [auth T]IPR001911Small ribosomal subunit protein bS21Family
W [auth S]IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
W [auth S]IPR002583Small ribosomal subunit protein bS20Family
V [auth R]IPR005732Small ribosomal subunit protein uS19, bacteriaFamily
V [auth R]IPR002222Small ribosomal subunit protein uS19Family
V [auth R]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
V [auth R]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
U [auth Q]IPR001648Small ribosomal subunit protein bS18Family
U [auth Q]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
U [auth Q]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
T [auth P]IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
T [auth P]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
T [auth P]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
T [auth P]IPR000266Small ribosomal subunit protein uS17Family
S [auth O]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
S [auth O]IPR000307Small ribosomal subunit protein bS16Family
Q [auth M]IPR023053Small ribosomal subunit protein uS14, bacteriaFamily
Q [auth M]IPR001209Small ribosomal subunit protein uS14Family
Q [auth M]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
Q [auth M]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
P [auth L]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
P [auth L]IPR001892Small ribosomal subunit protein uS13Family
P [auth L]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
P [auth L]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
P [auth L]IPR019980Small ribosomal subunit protein uS13, bacteriaFamily
O [auth K]IPR006032Small ribosomal subunit protein uS12Family
O [auth K]IPR005679Ribosomal protein uS12, bacteriaFamily
O [auth K]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
N [auth J]IPR001971Small ribosomal subunit protein uS11Family
N [auth J]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
N [auth J]IPR019981Small ribosomal subunit protein uS11, bacteriaFamily
N [auth J]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
M [auth I]IPR001848Small ribosomal subunit protein uS10Family
M [auth I]IPR027486Small ribosomal subunit protein uS10 domainDomain
M [auth I]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
M [auth I]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
K [auth G]IPR000630Small ribosomal subunit protein uS8Family
K [auth G]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
K [auth G]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
J [auth F]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
J [auth F]IPR000235Small ribosomal subunit protein uS7Family
J [auth F]IPR005717Small ribosomal subunit protein uS7, bacteria/organellaFamily
J [auth F]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
J [auth F]IPR023798Small ribosomal subunit protein uS7 domainDomain