8OW0
Cryo-EM structure of CBF1-CCAN bound topologically to a centromeric CENP-A nucleosome
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C [auth b] | SCOP2B Superfamily | Core histone-like | 8036586 | 3001387 | SCOP2B (2022-06-29) |
F [auth f] | SCOP2B Superfamily | Core histone-like | 8036586 | 3001387 | SCOP2B (2022-06-29) |
D [auth d] | SCOP2B Superfamily | Core histone-like | 8103853 | 3001387 | SCOP2B (2022-06-29) |
H [auth h] | SCOP2B Superfamily | Core histone-like | 8103853 | 3001387 | SCOP2B (2022-06-29) |
E [auth e] | SCOP2B Superfamily | Core histone-like | 8103851 | 3001387 | SCOP2B (2022-06-29) |
J [auth a] | SCOP2B Superfamily | Core histone-like | 8103851 | 3001387 | SCOP2B (2022-06-29) |
G [auth g] | SCOP2B Superfamily | Core histone-like | 8036588 | 3001387 | SCOP2B (2022-06-29) |
I [auth c] | SCOP2B Superfamily | Core histone-like | 8036588 | 3001387 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
P [auth L] | F_UNCLASSIFIED | e8ow0L1 | A: a+b two layers | X: Recombination-associated protein rdgC (From Topology) | H: Recombination-associated protein rdgC (From Topology) | T: Recombination-associated protein rdgC | F: F_UNCLASSIFIED | ECOD (1.6) |
W | F_UNCLASSIFIED | e8ow0W1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: F_UNCLASSIFIED | ECOD (1.6) |
C [auth b] | PF15511 | e8ow0b1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF15511 | ECOD (1.6) |
F [auth f] | PF15511 | e8ow0f1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF15511 | ECOD (1.6) |
D [auth d] | PF00125 | e8ow0d1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125 | ECOD (1.6) |
H [auth h] | PF00125 | e8ow0h1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125 | ECOD (1.6) |
E [auth e] | PF00125 | e8ow0e1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125 | ECOD (1.6) |
J [auth a] | PF00125 | e8ow0a1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125 | ECOD (1.6) |
G [auth g] | PF00125,PF16211 | e8ow0g1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125,PF16211 | ECOD (1.6) |
I [auth c] | PF00125,PF16211 | e8ow0c1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF00125,PF16211 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
Q [auth N] | PF05238 | Kinetochore protein CHL4 like (CENP-N) | Kinetochore protein CHL4 like | - | Family |
R [auth O] | PF09496 | Cenp-O kinetochore centromere component (CENP-O) | Cenp-O kinetochore centromere component | - | Family |
V [auth U] | PF20994 | CENPU protein (CENPU) | CENPU protein | - | Family |
Y [auth Z] | PF09447 | Cnl2/NKP2 family protein (Cnl2_NKP2) | Cnl2/NKP2 family protein | - | Family |
C [auth b], F [auth f] | PF15511 | Centromere kinetochore component CENP-T histone fold (CENP-T_C) | Centromere kinetochore component CENP-T histone fold | CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly asso ... | Domain |
D [auth d], H [auth h] | PF00125 | Core histone H2A/H2B/H3/H4 (Histone) | Core histone H2A/H2B/H3/H4 | - | Domain |
E [auth e], J [auth a] | PF00125 | Core histone H2A/H2B/H3/H4 (Histone) | Core histone H2A/H2B/H3/H4 | - | Domain |
G [auth g], I [auth c] | PF16211 | C-terminus of histone H2A (Histone_H2A_C) | C-terminus of histone H2A | - | Family |
G [auth g], I [auth c] | PF00125 | Core histone H2A/H2B/H3/H4 (Histone) | Core histone H2A/H2B/H3/H4 | - | Domain |
K [auth A], L [auth B] | PF00010 | Helix-loop-helix DNA-binding domain (HLH) | Helix-loop-helix DNA-binding domain | - | Domain |
M [auth H] | PF20993 | CENPH protein (CENPH) | CENPH protein | - | Family |