8OW0 | pdb_00008ow0

Cryo-EM structure of CBF1-CCAN bound topologically to a centromeric CENP-A nucleosome


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
F [auth f]SCOP2B SuperfamilyCore histone-like 8036586 3001387 SCOP2B (2022-06-29)
C [auth b]SCOP2B SuperfamilyCore histone-like 8036586 3001387 SCOP2B (2022-06-29)
H [auth h]SCOP2B SuperfamilyCore histone-like 8103853 3001387 SCOP2B (2022-06-29)
D [auth d]SCOP2B SuperfamilyCore histone-like 8103853 3001387 SCOP2B (2022-06-29)
J [auth a]SCOP2B SuperfamilyCore histone-like 8103851 3001387 SCOP2B (2022-06-29)
E [auth e]SCOP2B SuperfamilyCore histone-like 8103851 3001387 SCOP2B (2022-06-29)
I [auth c]SCOP2B SuperfamilyCore histone-like 8036588 3001387 SCOP2B (2022-06-29)
G [auth g]SCOP2B SuperfamilyCore histone-like 8036588 3001387 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
K [auth A],
L [auth B]
PF00010Helix-loop-helix DNA-binding domain (HLH)Helix-loop-helix DNA-binding domainDomain
M [auth H]PF20993CENPH protein (CENPH)CENPH protein- Family
Q [auth N]PF05238Kinetochore protein CHL4 like (CENP-N)Kinetochore protein CHL4 like- Family
R [auth O]PF09496Cenp-O kinetochore centromere component (CENP-O)Cenp-O kinetochore centromere component- Family
Y [auth Z]PF09447Cnl2/NKP2 family protein (Cnl2_NKP2)Cnl2/NKP2 family protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth D]C0N3 DNA---
B [auth E]C0N3 DNA---
C [auth b],
F [auth f]
Histone H4
D [auth d],
H [auth h]
Histone H2B.1
E [auth e],
J [auth a]
Histone H3-like centromeric protein CSE4
G [auth g],
I [auth c]
Histone H2A.1
K [auth A],
L [auth B]
Centromere-binding protein 1
M [auth H]Inner kinetochore subunit MCM16-
N [auth I]Inner kinetochore subunit CTF3-
O [auth K]Inner kinetochore subunit MCM22-
P [auth L]Inner kinetochore subunit IML3-
Q [auth N]Inner kinetochore subunit CHL4
R [auth O]Inner kinetochore subunit MCM21-
S [auth P]Inner kinetochore subunit CTF19-
T [auth Q]Inner kinetochore subunit OKP1-
U [auth T]Inner kinetochore subunit CNN1
V [auth U]Inner kinetochore subunit AME1-
Inner kinetochore subunit WIP1
X [auth Y]Inner kinetochore subunit NKP1-
Y [auth Z]Inner kinetochore subunit NKP2-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
C [auth b],
F [auth f]
IPR009072Histone-foldHomologous Superfamily
C [auth b],
F [auth f]
IPR035425CENP-T/Histone H4, histone foldDomain
C [auth b],
F [auth f]
IPR001951Histone H4Family
C [auth b],
F [auth f]
IPR019809Histone H4, conserved siteConserved Site
D [auth d],
H [auth h]
IPR009072Histone-foldHomologous Superfamily
D [auth d],
H [auth h]
IPR000558Histone H2BFamily
D [auth d],
H [auth h]
IPR007125Core Histone H2A/H2B/H3 domainDomain
D [auth d],
H [auth h]
IPR055333Histone H2B, conserved siteConserved Site
E [auth e],
J [auth a]
IPR009072Histone-foldHomologous Superfamily
E [auth e],
J [auth a]
IPR007125Core Histone H2A/H2B/H3 domainDomain
E [auth e],
J [auth a]
IPR000164Histone H3/CENP-AFamily
G [auth g],
I [auth c]
IPR009072Histone-foldHomologous Superfamily
G [auth g],
I [auth c]
IPR002119Histone H2AFamily
G [auth g],
I [auth c]
IPR007125Core Histone H2A/H2B/H3 domainDomain
G [auth g],
I [auth c]
IPR032454Histone H2A, C-terminal domainDomain
G [auth g],
I [auth c]
IPR032458Histone H2A conserved siteConserved Site
K [auth A],
L [auth B]
IPR047206Centromere-binding protein 1-like, bHLHzip domainDomain
K [auth A],
L [auth B]
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainDomain
K [auth A],
L [auth B]
IPR036638Helix-loop-helix DNA-binding domain superfamilyHomologous Superfamily
M [auth H]IPR048744Inner kinetochore subunit MCM16Family
Q [auth N]IPR007902Centromere protein Chl4/mis15/CENP-NFamily
R [auth O]IPR018464Centromere protein OFamily
V [auth U]IPR048743Inner kinetochore subunit AME1Domain
Y [auth Z]IPR018565Kinetochore subunit Nkp2/Cnl2Family