8OL1 | pdb_00008ol1

cGAS-Nucleosome in complex with SPSB3-ELOBC (composite structure)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
KSCOP2B SuperfamilyNucleotidyltransferase-like 8055835 3000129 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyPAP/OAS1 substrate-binding domain-like 8055833 3000941 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyCore histone-like 8070545 3001387 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyCore histone-like 8070545 3001387 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyUbiquitin-like 8038575 3000157 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyCore histone-like 8070531 3001387 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyCore histone-like 8070531 3001387 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF03281Mab-21 protein nucleotidyltransferase domain (Mab-21)Mab-21 protein nucleotidyltransferase domainThis family contains Mab-21 and Mab-21 like proteins. In C. elegans these proteins are required for several aspects of embryonic development [2-3]. Domain
PF20266Mab-21 protein HhH/H2TH-like domain (Mab-21_C)Mab-21 protein HhH/H2TH-like domainThis family contains Mab-21 and Mab-21 like proteins. In C. elegans these proteins are required for several aspects of embryonic development [2-3]. Domain
PF00125Core histone H2A/H2B/H3/H4 domain (Histone)Core histone H2A/H2B/H3/H4 domainDomain
PF16211C-terminus of histone H2A (Histone_H2A_C)C-terminus of histone H2A- Family
PF00125Core histone H2A/H2B/H3/H4 domain (Histone)Core histone H2A/H2B/H3/H4 domainDomain
PF00125Core histone H2A/H2B/H3/H4 domain (Histone)Core histone H2A/H2B/H3/H4 domainDomain
PF16211C-terminus of histone H2A (Histone_H2A_C)C-terminus of histone H2A- Family
PF00125Core histone H2A/H2B/H3/H4 domain (Histone)Core histone H2A/H2B/H3/H4 domainDomain
B, F
PF15511Centromere kinetochore component CENP-T histone fold (CENP-T_C)Centromere kinetochore component CENP-T histone foldCENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly asso ...CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly associate with CENP-A, but with histone H3 in the centromere region. CENP-T and -W form a hetero-tetramer with CENP-S and -X and bind to a ~100 bp region of nucleosome-free DNA forming a nucleosome-like structure. The DNA-CENP-T-W-S-X complex is likely to be associated with histone H3-containing nucleosomes rather than with CENP-nucleosomes. This domain is the C-terminal histone fold domain of CENP-T, which associates with chromatin [2-3].
Domain
PF00240Ubiquitin family (ubiquitin)Ubiquitin familyThis family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ...This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites [5].
Domain
PF03931Skp1 family, tetramerisation domain (Skp1_POZ)Skp1 family, tetramerisation domainDomain
PF00622SPRY domain (SPRY)SPRY domainSPRY Domain is named from SPla and the RYanodine Receptor and it is found in many eukaryotic proteins with a wide range of functions. It is a protein-interaction module involved in many important signalling pathways like RNA processing, regulation of ...SPRY Domain is named from SPla and the RYanodine Receptor and it is found in many eukaryotic proteins with a wide range of functions. It is a protein-interaction module involved in many important signalling pathways like RNA processing, regulation of histone H3 methylation, innate immunity or embryonic development [1,2,3,4]. It can be divided into 11 subfamilies based on amino acid sequence similarity or the presence of additional protein domains. The greater SPRY family is divided into the SPRY/B30.2 (which contains a PRY extension at the N-terminal) and SPRY-only sub-families which are preceded by a subdomain that is structurally similar to the PRY region [2]. SPRY/B30.2 structures revealed a bent beta-sandwich fold comprised of two beta-sheets. Distant homologues are domains in butyrophilin/ marenostrin/pyrin [1].
Domain
A, E
PF00125Core histone H2A/H2B/H3/H4 domain (Histone)Core histone H2A/H2B/H3/H4 domainDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Cyclic GMP-AMP synthase
DNA (145-MER)---
DNA (145-MER)---
Histone H2B type 1-N
Histone H2A type 1-J
Histone H2B type 1-H
Histone H2A type 1-H
B, F
Histone H4
Elongin-B
Elongin-C
SPRY domain-containing SOCS box protein 3
A, E
Histone H3.2

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR024810MAB21L/Cyclic GMP-AMP synthase-like receptorFamily
IPR046906Mab-21-like, HhH/H2TH-like domainDomain
IPR046903Mab-21-like, nucleotidyltransferase domainDomain
IPR009072Histone-foldHomologous Superfamily
IPR000558Histone H2BFamily
IPR007125Core Histone H2A/H2B/H3 domainDomain
IPR055333Histone H2B, conserved siteConserved Site
IPR009072Histone-foldHomologous Superfamily
IPR002119Histone H2AFamily
IPR032454Histone H2A, C-terminal domainDomain
IPR032458Histone H2A conserved siteConserved Site
IPR007125Core Histone H2A/H2B/H3 domainDomain
IPR009072Histone-foldHomologous Superfamily
IPR000558Histone H2BFamily
IPR007125Core Histone H2A/H2B/H3 domainDomain
IPR055333Histone H2B, conserved siteConserved Site
IPR009072Histone-foldHomologous Superfamily
IPR002119Histone H2AFamily
IPR032454Histone H2A, C-terminal domainDomain
IPR032458Histone H2A conserved siteConserved Site
IPR007125Core Histone H2A/H2B/H3 domainDomain
B, F
IPR009072Histone-foldHomologous Superfamily
B, F
IPR035425CENP-T/Histone H4, histone foldDomain
B, F
IPR001951Histone H4Family
B, F
IPR019809Histone H4, conserved siteConserved Site
B, F
IPR004823TATA box binding protein associated factor (TAF), histone-like fold domainDomain
IPR000626Ubiquitin-like domainDomain
IPR039049Elongin BFamily
IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
IPR016073SKP1 component, POZ domainDomain
IPR001232S-phase kinase-associated protein 1-likeFamily
IPR039948Elongin-CFamily
IPR011333SKP1/BTB/POZ domain superfamilyHomologous Superfamily
IPR035754SPRY domain-containing SOCS box protein 3, SPRY domainDomain
IPR001870B30.2/SPRY domainDomain
IPR013320Concanavalin A-like lectin/glucanase domain superfamilyHomologous Superfamily
IPR001496SOCS box domainDomain
IPR050672F-box/SPRY and SOCS box protein familiesFamily
IPR043136B30.2/SPRY domain superfamilyHomologous Superfamily
IPR003877SPRY domainDomain
A, E
IPR009072Histone-foldHomologous Superfamily
A, E
IPR007125Core Histone H2A/H2B/H3 domainDomain
A, E
IPR000164Histone H3/CENP-AFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosQ8N884
PharosQ99877
PharosQ99878
PharosQ93079
PharosQ96KK5
B, F
PharosP62805
PharosQ15370
PharosQ15369
PharosQ6PJ21
A, E
PharosQ71DI3