Annotations: 8OJJ

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	UBA	e8ojjD1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: UBA	ECOD (v294.2)
C	UBA	e8ojjC1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: UBA	ECOD (v294.2)
B	UBA	e8ojjB1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: UBA	ECOD (v294.2)
A	UBA	e8ojjA1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: UBA	ECOD (v294.2)

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF21984	DnaD N-terminal domain (DnaD_N)	DnaD N-terminal domain	DnaD is a primosomal protein that remodels supercoiled plasmids. It binds to supercoiled forms and converts them to open forms without nicking. The DnaD N-terminal domain has a scaffold-forming activity. This domain adopts classical winged helix fold ...	DnaD is a primosomal protein that remodels supercoiled plasmids. It binds to supercoiled forms and converts them to open forms without nicking. The DnaD N-terminal domain has a scaffold-forming activity. This domain adopts classical winged helix fold decorated with extensions at both termini [1-2].	Domain

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	DNA replication protein DnaD	DNA binding binding nucleic acid binding	DNA-templated DNA replication DNA replication, synthesis of primer RNA metabolic process primary metabolic process DNA metabolic process nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA replication biosynthetic process metabolic process DNA-templated DNA replication DNA replication, synthesis of primer RNA metabolic process primary metabolic process DNA metabolic process nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA replication biosynthetic process metabolic process cellular process macromolecule metabolic process	primosome complex protein-containing complex intracellular anatomical structure protein-DNA complex intracellular membraneless organelle chromosome intracellular organelle cellular anatomical structure organelle membraneless organelle replication fork replisome cytoplasm

Chains	Accession	Name	Type
A, B, C, D	IPR053162	DnaD	Family
A, B, C, D	IPR034829	DnaD-like domain superfamily	Homologous Superfamily
A, B, C, D	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
A, B, C, D	IPR006343	DnaB/C, C-terminal domain	Domain
A, B, C, D	IPR053843	DnaD, N-terminal domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

8OJJ | pdb_00008ojj