8OIT

39S human mitochondrial large ribosomal subunit with mtRF1 and P-site tRNA


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
W [auth BN]SCOP2B SuperfamilyRibosomal protein L48080706 3001146 SCOP2B (2022-06-29)
AA [auth BR]SCOP2B SuperfamilyRibosomal protein L138100460 3001134 SCOP2B (2022-06-29)
BA [auth BS]SCOP2B Superfamily50S Ribosomal protein L14-like8072072 3000433 SCOP2B (2022-06-29)
R [auth BI]SCOP2B SuperfamilyZn-binding ribosomal proteins8075050 3001320 SCOP2B (2022-06-29)
EA [auth BV]SCOP2B SuperfamilyProkaryotic ribosomal protein L178033689 3000995 SCOP2B (2022-06-29)
TA [auth Bl]SCOP2B SuperfamilyRibosomal protein L368083324 3001346 SCOP2B (2022-06-29)
YA [auth Bq]SCOP2B SuperfamilyMitochondrial ribosomal protein L27-like8053893 3002240 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth B1]PF16320e8oitB11 A: alpha duplicates or obligate multimersX: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)T: Ribosomal protein L7/12, oligomerisation (N-terminal) domainF: PF16320ECOD (1.6)
B [auth B2]PF16320e8oitB21 A: alpha duplicates or obligate multimersX: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)T: Ribosomal protein L7/12, oligomerisation (N-terminal) domainF: PF16320ECOD (1.6)
C [auth B3]PF16320e8oitB31 A: alpha duplicates or obligate multimersX: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)T: Ribosomal protein L7/12, oligomerisation (N-terminal) domainF: PF16320ECOD (1.6)
D [auth B4]PF16320e8oitB41 A: alpha duplicates or obligate multimersX: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)T: Ribosomal protein L7/12, oligomerisation (N-terminal) domainF: PF16320ECOD (1.6)
E [auth B5]PF16320e8oitB51 A: alpha duplicates or obligate multimersX: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)T: Ribosomal protein L7/12, oligomerisation (N-terminal) domainF: PF16320ECOD (1.6)
F [auth B6]PF16320e8oitB61 A: alpha duplicates or obligate multimersX: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)H: Ribosomal protein L7/12, oligomerisation (N-terminal) domain (From Topology)T: Ribosomal protein L7/12, oligomerisation (N-terminal) domainF: PF16320ECOD (1.6)
L [auth BC]PF00467,PF17136e8oitBC1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF17136ECOD (1.6)
N [auth BE]PF00830e8oitBE1 A: few secondary structure elementsX: Ribosomal protein bL28-related (From Homology)H: Ribosomal protein bL28-relatedT: Ribosomal protein L28F: PF00830ECOD (1.6)
O [auth BF]PF06984e8oitBF1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: PF06984ECOD (1.6)
P [auth BG]PF00327e8oitBG1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327ECOD (1.6)
Q [auth BH]PF01783e8oitBH1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01783ECOD (1.6)
S [auth BJ]PF00468e8oitBJ1 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: PF00468ECOD (1.6)
V [auth BM]PF00297e8oitBM1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00297ECOD (1.6)
W [auth BN]PF00573e8oitBN1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: PF00573ECOD (1.6)
X [auth BO]PF01281e8oitBO2 A: a+b two layersX: L9 N-domain-likeH: L9 N-domain-like (From Topology)T: L9 N-domain-likeF: PF01281ECOD (1.6)
X [auth BO]PF22078e8oitBO1 A: a+b two layersX: Ribosomal protein L9 C-domain (From Topology)H: Ribosomal protein L9 C-domain (From Topology)T: Ribosomal protein L9 C-domainF: PF22078ECOD (1.6)
AA [auth BR]PF00572e8oitBR1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: PF00572ECOD (1.6)
BA [auth BS]PF00238e8oitBS1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF00238ECOD (1.6)
CA [auth BT]PF00828e8oitBT1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF00828ECOD (1.6)
MA [auth Bd]PF09776e8oitBd1 A: few secondary structure elementsX: Ribosomal protein L31p (From Topology)H: Ribosomal protein L31p (From Topology)T: Ribosomal protein L31pF: PF09776ECOD (1.6)
QA [auth Bh]PF01084e8oitBh1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: PF01084ECOD (1.6)
RA [auth Bi]PF07147e8oitBi1 A: a/b three-layered sandwichesX: Restriction endonuclease-likeH: Restriction endonuclease-like (From Topology)T: Restriction endonuclease-likeF: PF07147ECOD (1.6)
SA [auth Bj]F_UNCLASSIFIEDe8oitBj1 A: a+b two layersX: a+b domain in Ribosomal protein L1 (From Topology)H: a+b domain in Ribosomal protein L1 (From Topology)T: a+b domain in Ribosomal protein L1F: F_UNCLASSIFIEDECOD (1.6)
ZA [auth Br]PF10210e8oitBr1 A: extended segmentsX: Mitoribosomal protein mL42 (From Topology)H: Mitoribosomal protein mL42 (From Topology)T: Mitoribosomal protein mL42F: PF10210ECOD (1.6)
AB [auth Bs]PF05047e8oitBs1 A: a+b three layersX: Thioredoxin-likeH: Thioredoxin-like (From Topology)T: Thioredoxin-likeF: PF05047ECOD (1.6)
BB [auth Bt]PF22935e8oitBt2 A: alpha arraysX: RNase III catalytic domain-like (From Topology)H: RNase III catalytic domain-like (From Topology)T: RNase III catalytic domain-likeF: PF22935ECOD (1.6)
BB [auth Bt]PF22892e8oitBt1 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: PF22892ECOD (1.6)
CB [auth Bu]PF04280e8oitBu1 A: a+b two layersX: Cystatin-likeH: NTF2-like (From Topology)T: NTF2-likeF: PF04280ECOD (1.6)
DB [auth Bv]PF11788e8oitBv1 A: a+b two layersX: beta-GraspH: Nudix (From Topology)T: NudixF: PF11788ECOD (1.6)
FB [auth Bx]PF05046e8oitBx1 A: a+b two layersX: Glucose permease domain IIB-likeH: eIF1-like (From Topology)T: eIF1-likeF: PF05046ECOD (1.6)
JB [auth Aa]PF03462e8oitAa2 A: alpha bundlesX: Release factor (Pfam 00472) N-terminal alpha helical domain (From Topology)H: Release factor (Pfam 00472) N-terminal alpha helical domain (From Topology)T: Release factor (Pfam 00472) N-terminal alpha helical domainF: PF03462ECOD (1.6)
JB [auth Aa]PF03462e8oitAa3 A: a+b two layersX: Alpha-beta plaitsH: Ferredoxin-like domain in release factor (From Topology)T: Ferredoxin-like domain in release factorF: PF03462ECOD (1.6)
JB [auth Aa]F_UNCLASSIFIEDe8oitAa1 A: a+b two layersX: dsRBD-likeH: Peptidyl-tRNA hydrolase domain-like (From Topology)T: Peptidyl-tRNA hydrolase domain-likeF: F_UNCLASSIFIEDECOD (1.6)
JB [auth Aa]PF00472e8oitAa4 A: a+b two layersX: dsRBD-likeH: Peptidyl-tRNA hydrolase domain-like (From Topology)T: Peptidyl-tRNA hydrolase domain-likeF: PF00472ECOD (1.6)
R [auth BI]PF00471e8oitBI1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF00471ECOD (1.6)
U [auth BL]PF00181e8oitBL1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00181ECOD (1.6)
U [auth BL]PF03947e8oitBL2 A: beta barrelsX: SH3H: SH3T: SH3F: PF03947ECOD (1.6)
Z [auth BQ]PF00298e8oitBQ1 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: PF00298ECOD (1.6)
Z [auth BQ]PF03946e8oitBQ2 A: a+b two layersX: Ribosomal protein L11/L12e N-terminal domain-likeH: Ribosomal protein L11/L12e N-terminal domain (From Topology)T: Ribosomal protein L11/L12e N-terminal domainF: PF03946ECOD (1.6)
DA [auth BU]PF00252e8oitBU1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: PF00252ECOD (1.6)
FA [auth BW]PF00861e8oitBW1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00861ECOD (1.6)
GA [auth BX]PF01245e8oitBX1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01245ECOD (1.6)
IA [auth BZ]PF00829e8oitBZ1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: PF00829ECOD (1.6)
JA [auth Ba]PF18699e8oitBa1 A: extended segmentsX: Mitoribosomal protein mL52 (From Topology)H: Mitoribosomal protein mL52 (From Topology)T: Mitoribosomal protein mL52F: PF18699ECOD (1.6)
KA [auth Bb]PF10780e8oitBb1 A: a+b three layersX: Thioredoxin-likeH: Thioredoxin-like (From Topology)T: Thioredoxin-likeF: PF10780ECOD (1.6)
NA [auth Be]PF14978e8oitBe1 A: extended segmentsX: Mitoribosomal protein mL63 (From Topology)H: Mitoribosomal protein mL63 (From Topology)T: Mitoribosomal protein mL63F: PF14978ECOD (1.6)
OA [auth Bf]PF00472e8oitBf1 A: a+b two layersX: dsRBD-likeH: Peptidyl-tRNA hydrolase domain-like (From Topology)T: Peptidyl-tRNA hydrolase domain-likeF: PF00472ECOD (1.6)
TA [auth Bl]PF00444e8oitBl1 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: PF00444ECOD (1.6)
UA [auth Bm]PF07147e8oitBm1 A: a/b three-layered sandwichesX: Restriction endonuclease-likeH: Restriction endonuclease-like (From Topology)T: Restriction endonuclease-likeF: PF07147ECOD (1.6)
VA [auth Bn]PF01161e8oitBn1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: PEBP-likeF: PF01161ECOD (1.6)
WA [auth Bo]PF02824e8oitBo1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: PF02824ECOD (1.6)
WA [auth Bo]F_UNCLASSIFIEDe8oitBo2 A: a+b two layersX: LuxS, MPP, ThrRS/AlaRS common domainH: LuxS, MPP, ThrRS/AlaRS common domainT: ThrRS/AlaRS editing domainF: F_UNCLASSIFIEDECOD (1.6)
YA [auth Bq]PF09809e8oitBq1 A: extended segmentsX: Mitochondrial 54S ribosomal protein L27 (From Topology)H: Mitochondrial 54S ribosomal protein L27 (From Topology)T: Mitochondrial 54S ribosomal protein L27F: PF09809ECOD (1.6)
J [auth BA]PF00237e8oitBA1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: PF00237ECOD (1.6)
EB [auth Bw]PF00338e8oitBw1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: PF00338ECOD (1.6)
HB [auth Bz]PF10244e8oitBz1 A: alpha bundlesX: Long alpha-hairpinH: Mitoribosomal protein mL51 (From Topology)T: Mitoribosomal protein mL51F: PF10244ECOD (1.6)
K [auth BB]PF00276e8oitBB1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00276ECOD (1.6)
M [auth BD]PF01016e8oitBD1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: PF01016ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF16320Ribosomal protein L7/L12 dimerisation domain (Ribosomal_L12_N)Ribosomal protein L7/L12 dimerisation domainThis is the N-terminal dimerisation domain of ribosomal protein L7/L12 [1].Domain
L [auth BC]PF17136Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)Ribosomal proteins 50S L24/mitochondrial 39S L24- Family
L [auth BC]PF00467KOW motif (KOW)KOW motif- Family
N [auth BE]PF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family
O [auth BF]PF06984Mitochondrial 39-S ribosomal protein L47 (MRP-L47) (MRP-L47)Mitochondrial 39-S ribosomal protein L47 (MRP-L47)- Family
P [auth BG]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
Q [auth BH]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
S [auth BJ]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
T [auth BK]PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
V [auth BM]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
W [auth BN]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
X [auth BO]PF01281Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)Ribosomal protein L9, N-terminal domain- Domain
Y [auth BP]PF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family
AA [auth BR]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
BA [auth BS]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
CA [auth BT]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
MA [auth Bd]PF09776Mitochondrial ribosomal protein L55 (Mitoc_L55)Mitochondrial ribosomal protein L55- Family
PA [auth Bg]PF10147Growth arrest and DNA-damage-inducible proteins-interacting protein 1 (CR6_interact)Growth arrest and DNA-damage-inducible proteins-interacting protein 1- Family
QA [auth Bh]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
RA [auth Bi]PF07147Mitochondrial 28S ribosomal protein S30 (PDCD9) (PDCD9)Mitochondrial 28S ribosomal protein S30 (PDCD9)- Family
SA [auth Bj]PF00687Ribosomal protein L1p/L10e family (Ribosomal_L1)Ribosomal protein L1p/L10e familyThis family includes prokaryotic L1 and eukaryotic L10.Domain
XA [auth Bp]PF09812Mitochondrial ribosomal protein L28 (MRP-L28)Mitochondrial ribosomal protein L28- Family
ZA [auth Br]PF10210Mitochondrial 28S ribosomal protein S32 (MRP-S32)Mitochondrial 28S ribosomal protein S32- Family
AB [auth Bs]PF05047Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain (L51_S25_CI-B8)Mitochondrial ribosomal protein L51 / S25 / CI-B8 domainThe proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all member ...The proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all members of this family form part of the NADH-ubiquinone oxidoreductase and whether they are also all ribosomal proteins. Structurally related to thioredoxin-fold.
Domain
CB [auth Bu]PF04280Tim44-like domain (Tim44)Tim44-like domainTim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane [1]. Tim44 is thought to bind phospholipids of the mitochondrial inner membrane both by electrostati ...Tim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane [1]. Tim44 is thought to bind phospholipids of the mitochondrial inner membrane both by electrostatic interactions and by penetrating the polar head group region [1]. This family includes the C-terminal region of Tim44 that has been shown to form a stable proteolytic fragment in yeast. This region is also found in a set of smaller bacterial proteins. The molecular function of the bacterial members of this family is unknown but transport seems likely. The crystal structure of the C terminal of Tim44 has revealed a large hydrophobic pocket which might play an important role in interacting with the acyl chains of lipid molecules in the mitochondrial membrane [3].
Domain
DB [auth Bv]PF1178839S mitochondrial ribosomal protein L46 (MRP-L46)39S mitochondrial ribosomal protein L46- Family
FB [auth Bx]PF05046Mitochondrial large subunit ribosomal protein (Img2) (Img2)Mitochondrial large subunit ribosomal protein (Img2)This family of proteins have been identified as part of the mitochondrial large ribosomal subunit in yeast [1].Domain
JB [auth Aa]PF03462PCRF domain (PCRF)PCRF domainThis domain is found in peptide chain release factors.Domain
JB [auth Aa]PF00472RF-1 domain (RF-1)RF-1 domain- Family
R [auth BI]PF00471Ribosomal protein L33 (Ribosomal_L33)Ribosomal protein L33- Family
U [auth BL]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
U [auth BL]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
Z [auth BQ]PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.Domain
Z [auth BQ]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domain- Domain
DA [auth BU]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
EA [auth BV]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
FA [auth BW]PF00861Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast- Family
GA [auth BX]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
HA [auth BY]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
IA [auth BZ]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
JA [auth Ba]PF18699Mitoribosomal protein mL52 (MRPL52)Mitoribosomal protein mL52- Family
KA [auth Bb]PF1078039S ribosomal protein L53/MRP-L53 (MRP_L53)39S ribosomal protein L53/MRP-L53- Family
LA [auth Bc]PF08561Mitochondrial ribosomal protein L37 (Ribosomal_L37)Mitochondrial ribosomal protein L37- Family
NA [auth Be]PF14978Mitochondrial ribosome protein 63 (MRP-63)Mitochondrial ribosome protein 63- Family
TA [auth Bl]PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36- Domain
UA [auth Bm]PF07147Mitochondrial 28S ribosomal protein S30 (PDCD9) (PDCD9)Mitochondrial 28S ribosomal protein S30 (PDCD9)- Family
VA [auth Bn]PF01161Phosphatidylethanolamine-binding protein (PBP)Phosphatidylethanolamine-binding protein- Domain
YA [auth Bq]PF09809Mitochondrial ribosomal protein L27 (MRP-L27)Mitochondrial ribosomal protein L27- Family
J [auth BA]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
EB [auth Bw]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
GB [auth By]PF10501Ribosomal subunit 39S (Ribosomal_L50)Ribosomal subunit 39SThe 39S ribosomal protein appears to be a subunit of one of the larger mitochondrial 66S or 70S units [1]. Under conditions of ethanol-stress in rats the larger subunit is largely dissociated into its smaller components [2]. In E. coli, in the absenc ...The 39S ribosomal protein appears to be a subunit of one of the larger mitochondrial 66S or 70S units [1]. Under conditions of ethanol-stress in rats the larger subunit is largely dissociated into its smaller components [2]. In E. coli, in the absence of the enzyme pseudouridine synthase (RluD) synthase, there is an accumulation of 50S and 30S subunits and the appearance of abnormal particles (62S and 39S), with concomitant loss of 70S ribosomes [2].
Domain
HB [auth Bz]PF10244Mitochondrial ribosomal subunit (MRP-L51)Mitochondrial ribosomal subunit- Family
K [auth BB]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
M [auth BD]PF01016Ribosomal L27 protein (Ribosomal_L27)Ribosomal L27 protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
39S ribosomal protein L12, mitochondrial
H [auth B8]16S rRNA---
L [auth BC]39S ribosomal protein L24, mitochondrial
N [auth BE]39S ribosomal protein L28, mitochondrial
O [auth BF]39S ribosomal protein L47, mitochondrial
P [auth BG]39S ribosomal protein L30, mitochondrial
Q [auth BH]39S ribosomal protein L32, mitochondrial
S [auth BJ]39S ribosomal protein L34, mitochondrial
T [auth BK]39S ribosomal protein L35, mitochondrial
V [auth BM]39S ribosomal protein L3, mitochondrial
W [auth BN]39S ribosomal protein L4, mitochondrial
X [auth BO]39S ribosomal protein L9, mitochondrial
Y [auth BP]39S ribosomal protein L10, mitochondrial
AA [auth BR]39S ribosomal protein L13, mitochondrial
BA [auth BS]39S ribosomal protein L14, mitochondrial
CA [auth BT]39S ribosomal protein L15, mitochondrial
MA [auth Bd]39S ribosomal protein L55, mitochondrial
PA [auth Bg]Growth arrest and DNA damage-inducible proteins-interacting protein 1-
QA [auth Bh]39S ribosomal protein S18a, mitochondrial
RA [auth Bi]39S ribosomal protein S30, mitochondrial
SA [auth Bj]39S ribosomal protein L1, mitochondrial
XA [auth Bp]39S ribosomal protein L40, mitochondrial
ZA [auth Br]39S ribosomal protein L42, mitochondrial
AB [auth Bs]39S ribosomal protein L43, mitochondrial
BB [auth Bt]39S ribosomal protein L44, mitochondrial
CB [auth Bu]39S ribosomal protein L45, mitochondrial
DB [auth Bv]39S ribosomal protein L46, mitochondrial
FB [auth Bx]39S ribosomal protein L49, mitochondrial
IB [auth AG]P-site Met-tRNA(Met)---
JB [auth Aa]Peptide chain release factor 1, mitochondrial
R [auth BI]39S ribosomal protein L33, mitochondrial
U [auth BL]39S ribosomal protein L2, mitochondrial
G [auth B7]E-site tRNA---
Z [auth BQ]39S ribosomal protein L11, mitochondrial
DA [auth BU]39S ribosomal protein L16, mitochondrial
EA [auth BV]39S ribosomal protein L17, mitochondrial
FA [auth BW]39S ribosomal protein L18, mitochondrial
GA [auth BX]39S ribosomal protein L19, mitochondrial
HA [auth BY]39S ribosomal protein L20, mitochondrial
IA [auth BZ]39S ribosomal protein L21, mitochondrial
JA [auth Ba]39S ribosomal protein L52, mitochondrial
KA [auth Bb]39S ribosomal protein L53, mitochondrial-
LA [auth Bc]39S ribosomal protein L54, mitochondrial
NA [auth Be]Ribosomal protein 63, mitochondrial
OA [auth Bf]Peptidyl-tRNA hydrolase ICT1, mitochondrial
I [auth B9]CP Val-tRNA(Val)---
TA [auth Bl]39S ribosomal protein L36, mitochondrial
UA [auth Bm]39S ribosomal protein L37, mitochondrial
VA [auth Bn]39S ribosomal protein L38, mitochondrial-
WA [auth Bo]39S ribosomal protein L39, mitochondrial
YA [auth Bq]39S ribosomal protein L41, mitochondrial
J [auth BA]39S ribosomal protein L22, mitochondrial
EB [auth Bw]39S ribosomal protein L48, mitochondrial-
GB [auth By]39S ribosomal protein L50, mitochondrial-
HB [auth Bz]39S ribosomal protein L51, mitochondrial
K [auth BB]39S ribosomal protein L23, mitochondrial
M [auth BD]39S ribosomal protein L27, mitochondrial

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR013823Large ribosomal subunit protein bL12, C-terminalDomain
IPR008932Large ribosomal subunit protein bL12, oligomerizationDomain
IPR036235Large ribosomal subunit protein bL12, oligomerization domain superfamilyHomologous Superfamily
IPR014719Ribosomal protein bL12, C-terminal/adaptor protein ClpS-likeHomologous Superfamily
IPR000206Large ribosomal subunit protein bL12Family
L [auth BC]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
L [auth BC]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
L [auth BC]IPR003256Large ribosomal subunit protein uL24Family
L [auth BC]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
L [auth BC]IPR005824KOWDomain
L [auth BC]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
N [auth BE]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
N [auth BE]IPR026569Large ribosomal subunit protein bL28Family
N [auth BE]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
O [auth BF]IPR038340MRP-L47 superfamily, mitochondrialHomologous Superfamily
O [auth BF]IPR010729Large ribosomal subunit protein uL29m, mitochondrialFamily
P [auth BG]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
P [auth BG]IPR005996Large ribosomal subunit protein uL30, bacterial-typeFamily
P [auth BG]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
Q [auth BH]IPR002677Large ribosomal subunit protein bL32Family
Q [auth BH]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
S [auth BJ]IPR000271Large ribosomal subunit protein bL34Family
T [auth BK]IPR021137Large ribosomal subunit protein bL35-likeFamily
T [auth BK]IPR019338Large ribosomal subunit protein bL35mFamily
T [auth BK]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
V [auth BM]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
V [auth BM]IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
V [auth BM]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
V [auth BM]IPR000597Large ribosomal subunit protein uL3Family
W [auth BN]IPR013005Large ribosomal subunit protein uL4-likeFamily
W [auth BN]IPR002136Large ribosomal subunit protein uL4Family
W [auth BN]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
X [auth BO]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
X [auth BO]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
X [auth BO]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
X [auth BO]IPR000244Large ribosomal subunit protein bL9Family
Y [auth BP]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
Y [auth BP]IPR001790Large ribosomal subunit protein uL10Family
Y [auth BP]IPR047865Large ribosomal subunit protein uL10, bacterial typeFamily
AA [auth BR]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
AA [auth BR]IPR005822Large ribosomal subunit protein uL13Family
AA [auth BR]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
AA [auth BR]IPR005823Large ribosomal subunit protein uL13, bacterial-typeFamily
BA [auth BS]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
BA [auth BS]IPR000218Large ribosomal subunit protein uL14Family
CA [auth BT]IPR005749Large ribosomal subunit protein uL15, bacterial-typeFamily
CA [auth BT]IPR021131Large ribosomal subunit protein uL15/eL18Domain
CA [auth BT]IPR030878Large ribosomal subunit protein uL15Family
CA [auth BT]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
MA [auth Bd]IPR044884Large ribosomal subunit protein mL55 superfamilyHomologous Superfamily
MA [auth Bd]IPR018615Large ribosomal subunit protein mL55Family
PA [auth Bg]IPR018472Large ribosomal subunit protein mL64Family
PA [auth Bg]IPR043035Large ribosomal subunit protein mL64 domain superfamilyHomologous Superfamily
QA [auth Bh]IPR001648Small ribosomal subunit protein bS18Family
QA [auth Bh]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
RA [auth Bi]IPR039982Large ribosomal subunit protein mL65Family
RA [auth Bi]IPR010793Large ribosomal subunit protein mL37/mL65Family
SA [auth Bj]IPR005879Large ribosomal subunit protein uL1, mitochondrialFamily
SA [auth Bj]IPR016095Large ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domainHomologous Superfamily
SA [auth Bj]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
SA [auth Bj]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily
XA [auth Bp]IPR019192Large ribosomal subunit protein mL40Family
XA [auth Bp]IPR039145Large ribosomal subunit protein mL40, metazoa/plantsFamily
ZA [auth Br]IPR019346Large ribosomal subunit protein mL42Family
AB [auth Bs]IPR007741Ribosomal protein/NADH dehydrogenase domainDomain
AB [auth Bs]IPR036249Thioredoxin-like superfamilyHomologous Superfamily
AB [auth Bs]IPR039927Large ribosomal subunit protein mL43Family
BB [auth Bt]IPR036389Ribonuclease III, endonuclease domain superfamilyHomologous Superfamily
BB [auth Bt]IPR044444Large ribosomal subunit protein mL44, dsRNA binding domain, metazoaDomain
BB [auth Bt]IPR014720Double-stranded RNA-binding domainDomain
CB [auth Bu]IPR032710NTF2-like domain superfamilyHomologous Superfamily
CB [auth Bu]IPR007379Tim44-like domainDomain
DB [auth Bv]IPR015797NUDIX hydrolase-like domain superfamilyHomologous Superfamily
DB [auth Bv]IPR021757Large ribosomal subunit protein mL46, N-terminalDomain
DB [auth Bv]IPR040008Large ribosomal subunit protein mL46Family
DB [auth Bv]IPR033650Large ribosomal subunit protein mL46, NUDIX domainDomain
FB [auth Bx]IPR007740Large ribosomal subunit protein mL49Family
JB [auth Aa]IPR000352Peptide chain release factor class IDomain
JB [auth Aa]IPR045853Peptide chain release factor class I superfamilyHomologous Superfamily
JB [auth Aa]IPR005139Peptide chain release factorDomain
R [auth BI]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
R [auth BI]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
R [auth BI]IPR001705Large ribosomal subunit protein bL33Family
U [auth BL]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
U [auth BL]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
U [auth BL]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
U [auth BL]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
U [auth BL]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
U [auth BL]IPR002171Large ribosomal subunit protein uL2Family
Z [auth BQ]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
Z [auth BQ]IPR000911Ribosomal protein uL11Family
Z [auth BQ]IPR006519Large ribosomal subunit protein uL11, bacterial-typeFamily
Z [auth BQ]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
Z [auth BQ]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
Z [auth BQ]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
DA [auth BU]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
DA [auth BU]IPR000114Large ribosomal subunit protein uL16, bacterial-typeFamily
DA [auth BU]IPR016180Large ribosomal subunit protein uL16 domainDomain
DA [auth BU]IPR047873Large ribosomal subunit protein uL16Family
EA [auth BV]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
EA [auth BV]IPR000456Large ribosomal subunit protein bL17Family
FA [auth BW]IPR005484Large ribosomal subunit protein uL18Family
FA [auth BW]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
GA [auth BX]IPR001857Large ribosomal subunit protein bL19Family
GA [auth BX]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
GA [auth BX]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
HA [auth BY]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
HA [auth BY]IPR005813Large ribosomal subunit protein bL20Family
IA [auth BZ]IPR028909Large ribosomal subunit protein bL21-likeFamily
IA [auth BZ]IPR001787Large ribosomal subunit protein bL21Family
IA [auth BZ]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
JA [auth Ba]IPR034596Large ribosomal subunit protein mL52Family
KA [auth Bb]IPR019716Large ribosomal subunit protein mL53Family
LA [auth Bc]IPR013870Large ribosomal subunit protein mL54Family
NA [auth Be]IPR016576Large ribosomal subunit protein mL63Family
OA [auth Bf]IPR000352Peptide chain release factor class IDomain
TA [auth Bl]IPR000473Large ribosomal subunit protein bL36Family
TA [auth Bl]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
UA [auth Bm]IPR010793Large ribosomal subunit protein mL37/mL65Family
VA [auth Bn]IPR036610PEBP-like superfamilyHomologous Superfamily
VA [auth Bn]IPR008914Phosphatidylethanolamine-binding proteinFamily
VA [auth Bn]IPR035810Phosphatidylethanolamine-binding protein, eukaryoticFamily
WA [auth Bo]IPR012676TGS-likeHomologous Superfamily
WA [auth Bo]IPR018163Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamilyHomologous Superfamily
WA [auth Bo]IPR004095TGSDomain
WA [auth Bo]IPR012675Beta-grasp domain superfamilyHomologous Superfamily
YA [auth Bq]IPR019189Large ribosomal subunit protein mL41Family
J [auth BA]IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
J [auth BA]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
J [auth BA]IPR001063Large ribosomal subunit protein uL22Family
EB [auth Bw]IPR027486Small ribosomal subunit protein uS10 domainDomain
EB [auth Bw]IPR027487Large ribosomal subunit protein mL48Family
EB [auth Bw]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
GB [auth By]IPR018305Large ribosomal subunit protein mL50Family
HB [auth Bz]IPR019373Large ribosomal subunit protein mL51Family
K [auth BB]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
K [auth BB]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
K [auth BB]IPR013025Large ribosomal subunit protein uL23-likeFamily
M [auth BD]IPR001684Large ribosomal subunit protein bL27Family

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosP52815
L [auth BC]PharosQ96A35
N [auth BE]PharosQ13084
O [auth BF]PharosQ9HD33
P [auth BG]PharosQ8TCC3
Q [auth BH]PharosQ9BYC8
S [auth BJ]PharosQ9BQ48
T [auth BK]PharosQ9NZE8
V [auth BM]PharosP09001
W [auth BN]PharosQ9BYD3
X [auth BO]PharosQ9BYD2
Y [auth BP]PharosQ7Z7H8
AA [auth BR]PharosQ9BYD1
BA [auth BS]PharosQ6P1L8
CA [auth BT]PharosQ9P015
MA [auth Bd]PharosQ7Z7F7
PA [auth Bg]PharosQ8TAE8
QA [auth Bh]PharosQ9NVS2
RA [auth Bi]PharosQ9NP92
SA [auth Bj]PharosQ9BYD6
XA [auth Bp]PharosQ9NQ50
ZA [auth Br]PharosQ9Y6G3
AB [auth Bs]PharosQ8N983
BB [auth Bt]PharosQ9H9J2
CB [auth Bu]PharosQ9BRJ2
FB [auth Bx]PharosQ13405
JB [auth Aa]PharosO75570
R [auth BI]PharosO75394
U [auth BL]PharosQ5T653
Z [auth BQ]PharosQ9Y3B7
DA [auth BU]PharosQ9NX20
EA [auth BV]PharosQ9NRX2
FA [auth BW]PharosQ9H0U6
GA [auth BX]PharosP49406
HA [auth BY]PharosQ9BYC9
JA [auth Ba]PharosQ86TS9
LA [auth Bc]PharosQ6P161
NA [auth Be]PharosQ9BQC6
OA [auth Bf]PharosQ14197
TA [auth Bl]PharosQ9P0J6
UA [auth Bm]PharosQ9BZE1
WA [auth Bo]PharosQ9NYK5
YA [auth Bq]PharosQ8IXM3
J [auth BA]PharosQ9NWU5
EB [auth Bw]PharosQ96GC5
GB [auth By]PharosQ8N5N7
HB [auth Bz]PharosQ4U2R6
K [auth BB]PharosQ16540
M [auth BD]PharosQ9P0M9