8OIO | pdb_00008oio

Crystal structure of the kelch domain of human KLHL12 in complex with PLEKHA4 peptide

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Kelch motif	8084981	3000448	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Kelch motif	8084981	3000448	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Kelch motif	8084981	3000448	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Kelch motif	8084981	3000448	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF01344	Kelch motif (Kelch_1)	Kelch motif	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E [auth F], F [auth G], G [auth H], H [auth E]	Pleckstrin homology domain-containing family A member 4	phosphatidylinositol-3,5-bisphosphate binding binding ion binding anion binding phosphatidylinositol bisphosphate binding phospholipid binding lipid binding phosphatidylinositol phosphate binding phosphatidylinositol binding small molecule binding phosphatidylinositol-4,5-bisphosphate binding phosphatidylinositol-3,4-bisphosphate binding phosphatidylinositol-3-phosphate binding identical protein binding phosphatidylinositol-3,5-bisphosphate binding binding ion binding anion binding phosphatidylinositol bisphosphate binding phospholipid binding lipid binding phosphatidylinositol phosphate binding phosphatidylinositol binding small molecule binding phosphatidylinositol-4,5-bisphosphate binding phosphatidylinositol-3,4-bisphosphate binding phosphatidylinositol-3-phosphate binding identical protein binding protein binding	cellular response to stimulus positive regulation of cell communication regulation of cellular process positive regulation of signal transduction response to stimulus signaling regulation of canonical Wnt signaling pathway canonical Wnt signaling pathway positive regulation of biological process regulation of signal transduction cell communication positive regulation of response to stimulus positive regulation of Wnt signaling pathway signal transduction cellular response to stimulus positive regulation of cell communication regulation of cellular process positive regulation of signal transduction response to stimulus signaling regulation of canonical Wnt signaling pathway canonical Wnt signaling pathway positive regulation of biological process regulation of signal transduction cell communication positive regulation of response to stimulus positive regulation of Wnt signaling pathway signal transduction Wnt signaling pathway positive regulation of cellular process positive regulation of canonical Wnt signaling pathway regulation of biological process regulation of signaling cell surface receptor signaling pathway regulation of Wnt signaling pathway biological regulation regulation of response to stimulus regulation of cell communication cellular process positive regulation of signaling Wnt signaling pathway, planar cell polarity pathway positive regulation of non-canonical Wnt signaling pathway non-canonical Wnt signaling pathway positive regulation of Wnt signaling pathway, planar cell polarity pathway regulation of Wnt signaling pathway, planar cell polarity pathway regulation of non-canonical Wnt signaling pathway	cell periphery extrinsic component of plasma membrane cellular anatomical structure cytoplasmic side of plasma membrane cytoplasmic side of membrane membrane plasma membrane extrinsic component of membrane extrinsic component of cytoplasmic side of plasma membrane side of membrane intracellular anatomical structure cytoplasm
A, B, C, D	Kelch-like protein 12	ubiquitin-like ligase-substrate adaptor activity enzyme-substrate adaptor activity protein-macromolecule adaptor activity molecular adaptor activity identical protein binding protein binding binding	establishment of organelle localization vesicle budding from membrane cellular localization transport vesicle targeting, to, from or within Golgi vesicle-mediated transport vesicle targeting cellular component organization vesicle organization cellular component biogenesis localization cellular component assembly organelle localization establishment of localization in cell protein-containing complex assembly establishment of organelle localization vesicle budding from membrane cellular localization transport vesicle targeting, to, from or within Golgi vesicle-mediated transport vesicle targeting cellular component organization vesicle organization cellular component biogenesis localization cellular component assembly organelle localization establishment of localization in cell protein-containing complex assembly vesicle coating cellular component organization or biogenesis vesicle targeting, rough ER to cis-Golgi membrane organization vesicle localization protein-containing complex organization establishment of vesicle localization intracellular transport endoplasmic reticulum to Golgi vesicle-mediated transport establishment of localization organelle organization cellular process COPII-coated vesicle budding COPII vesicle coating Golgi vesicle transport cellular response to stimulus regulation of biological process regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling biological regulation cell communication signal transduction Wnt signaling pathway developmental process stem cell development neural crest cell differentiation cellular developmental process animal organ development neural crest cell development cell development mesenchyme development tissue development stem cell differentiation cell differentiation anatomical structure development mesenchymal cell differentiation multicellular organismal process chordate embryonic development embryo development neural crest formation epithelial to mesenchymal transition multicellular organism development anatomical structure morphogenesis embryo development ending in birth or egg hatching anatomical structure formation involved in morphogenesis primary metabolic process protein monoubiquitination protein ubiquitination macromolecule modification metabolic process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal catabolic process proteolysis involved in protein catabolic process proteasomal protein catabolic process protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process proteolysis ubiquitin-dependent protein catabolic process	intracellular anatomical structure intracellular membraneless organelle intracellular organelle centrosome microtubule organizing center cellular anatomical structure cytoskeleton centriolar satellite organelle membraneless organelle microtubule cytoskeleton cytoplasm cytosol membrane-bounded organelle intracellular anatomical structure intracellular membraneless organelle intracellular organelle centrosome microtubule organizing center cellular anatomical structure cytoskeleton centriolar satellite organelle membraneless organelle microtubule cytoskeleton cytoplasm cytosol membrane-bounded organelle intracellular membrane-bounded organelle intracellular vesicle COPII-coated ER to Golgi transport vesicle cytoplasmic vesicle coated vesicle vesicle cullin-RING ubiquitin ligase complex protein-containing complex ubiquitin ligase complex catalytic complex transferase complex Cul3-RING ubiquitin ligase complex intracellular protein-containing complex vesicle coat transport vesicle membrane membrane protein complex endomembrane system membrane coat bounding membrane of organelle vesicle membrane ER to Golgi transport vesicle membrane transport vesicle membrane coated membrane COPII vesicle coat cytoplasmic vesicle membrane coated vesicle membrane organelle membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
E [auth F], F [auth G], G [auth H], H [auth E]	IPR001849	Pleckstrin homology domain	Domain
E [auth F], F [auth G], G [auth H], H [auth E]	IPR011993	PH-like domain superfamily	Homologous Superfamily
E [auth F], F [auth G], G [auth H], H [auth E]	IPR040392	PKHA4-7, PH domain	Domain
A, B, C, D	IPR017096	BTB-kelch protein	Family
A, B, C, D	IPR000210	BTB/POZ domain	Domain
A, B, C, D	IPR006652	Kelch repeat type 1	Repeat
A, B, C, D	IPR011705	BTB/Kelch-associated	Domain
A, B, C, D	IPR011333	SKP1/BTB/POZ domain superfamily	Homologous Superfamily
A, B, C, D	IPR015915	Kelch-type beta-propeller	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
E [auth F], F [auth G], G [auth H], H [auth E]	Pharos: Q9H4M7	atypical teratoid rhabdoid tumor malignant ependymoma subependymal giant cell astrocytoma breast cancer malignant glioma glioblastoma pilocytic astrocytoma
A, B, C, D	Pharos: Q53G59	breast cancer ovarian cancer juvenile dermatomyositis myopathy

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.