8K9G
Cryo-EM structure of Crt-SPARTA-gRNA-tDNA dimer (conformation-1)
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| E [auth A] | F_UNCLASSIFIED | e8k9gA2 | A: a/b three-layered sandwiches | X: Middle domain in Argonaute homologs (From Topology) | H: Middle domain in Argonaute homologs (From Topology) | T: Middle domain in Argonaute homologs | F: F_UNCLASSIFIED | ECOD (1.6) |
| E [auth A] | F_UNCLASSIFIED | e8k9gA1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: F_UNCLASSIFIED | ECOD (1.6) |
| G [auth E] | F_UNCLASSIFIED | e8k9gE2 | A: a/b three-layered sandwiches | X: Middle domain in Argonaute homologs (From Topology) | H: Middle domain in Argonaute homologs (From Topology) | T: Middle domain in Argonaute homologs | F: F_UNCLASSIFIED | ECOD (1.6) |
| G [auth E] | F_UNCLASSIFIED | e8k9gE1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: F_UNCLASSIFIED | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| F [auth B], H [auth F] | PF13676 | TIR domain (TIR_2) | TIR domain | This is a family of Toll-like receptors. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| A [auth D], C [auth H] | DNA (45-mer) | - | - | - |
| B [auth C], D [auth G] | RNA (5'-R(P*UP*GP*AP*GP*GP*UP*AP*GP*UP*AP*GP*GP*UP*UP*GP*UP*AP*UP*AP*GP*U)-3') | - | - | - |
| E [auth A], G [auth E] | Piwi domain-containing protein | - | - | |
| F [auth B], H [auth F] | TIR domain-containing protein | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| E [auth A], G [auth E] | IPR036397 | Ribonuclease H superfamily | Homologous Superfamily |
| E [auth A], G [auth E] | IPR012337 | Ribonuclease H-like superfamily | Homologous Superfamily |
| F [auth B], H [auth F] | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain | Domain |
| F [auth B], H [auth F] | IPR035897 | Toll/interleukin-1 receptor homology (TIR) domain superfamily | Homologous Superfamily |
