Annotations: 8K42

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Z [auth t]	DNA_topoisoIV	e8k42t1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
Y [auth s]	DNA_topoisoIV	e8k42s1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
X [auth r]	DUF520	e8k42r01	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DUF520	ECOD (v294.2)
CA [auth w]	DNA_topoisoIV	e8k42w1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
BA [auth v]	DNA_topoisoIV	e8k42v1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)
AA [auth u]	DNA_topoisoIV	e8k42u1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: DNA_topoisoIV	ECOD (v294.2)

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
AA [auth u], BA [auth v], CA [auth w], X [auth r], Y [auth s], AA [auth u], BA [auth v], CA [auth w], X [auth r], Y [auth s], Z [auth t]	VP9	identical protein binding protein binding binding	-	-
R, S, T, U, V R, S, T, U, V, W	VP4	-	-	-
P, Q	VP10	-	-	-
C, D, E, F, G C, D, E, F, G, H, I, J, K, L, M, N, O	VP8	-	-	-
A, B	VP2	-	-	-

Chains	Accession	Name	Type
AA [auth u], BA [auth v], CA [auth w], X [auth r], Y [auth s], AA [auth u], BA [auth v], CA [auth w], X [auth r], Y [auth s], Z [auth t]	IPR015072	Outer capsid protein VP9/VP10/VP11	Family
AA [auth u], BA [auth v], CA [auth w], X [auth r], Y [auth s], AA [auth u], BA [auth v], CA [auth w], X [auth r], Y [auth s], Z [auth t]	IPR043116	Outer capsid protein VP9, N-terminal	Homologous Superfamily
R, S, T, U, V R, S, T, U, V, W	IPR026383	Seadornavirus VP4 protein	Family
P, Q	IPR009930	Structural protein Vp10, Seadornavirus	Family
C, D, E, F, G C, D, E, F, G, H, I, J, K, L, M, N, O	IPR026380	Seadornavirus VP8 protein	Family
A, B	IPR026384	Seadornavirus VP2 protein	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

8K42 | pdb_00008k42