8K39 | pdb_00008k39

Structure of the bacteriophage lambda portal vertex

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
Z [auth R]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
Y [auth Q]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
X [auth P]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
W [auth O]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
V [auth N]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
U [auth M]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
T [auth L]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
S [auth K]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
R [auth J]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
Q [auth I]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
PA [auth h]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
P [auth H]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
OA [auth g]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
O [auth G]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
N [auth F]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
M [auth E]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
L [auth D]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
K [auth C]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
J [auth B]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
I [auth A]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
H [auth 7]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
G [auth 6]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
F [auth 5]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
E [auth 4]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
D [auth 3]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
C [auth 2]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
BA [auth T]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
B [auth 1]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
AA [auth S]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)
A [auth 0]	SCOP2B Superfamily	Phage coat protein-like	8106222	3001529	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Z [auth R]	Cullin_AB	e8k39R1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (v294.1)
Y [auth Q]	Cullin_AB	e8k39Q1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (v294.1)
X [auth P]	Cullin_AB	e8k39P1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (v294.1)
W [auth O]	Cullin_AB	e8k39O1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (v294.1)
V [auth N]	Cullin_AB	e8k39N1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (v294.1)
U [auth M]	Cullin_AB	e8k39M1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (v294.1)
T [auth L]	Cullin_AB	e8k39L1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (v294.1)
S [auth K]	Cullin_AB	e8k39K1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (v294.1)
R [auth J]	Cullin_AB	e8k39J1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (v294.1)
Q [auth I]	Cullin_AB	e8k39I1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (v294.1)
PA [auth h]	Cullin_AB	e8k39h1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (v294.1)
P [auth H]	Cullin_AB	e8k39H1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (v294.1)
OA [auth g]	Cullin_AB	e8k39g1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (v294.1)
O [auth G]	Cullin_AB	e8k39G1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (v294.1)
N [auth F]	Cullin_AB	e8k39F1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (v294.1)
M [auth E]	Cullin_AB	e8k39E1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (v294.1)
L [auth D]	Cullin_AB	e8k39D1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (v294.1)
K [auth C]	Cullin_AB	e8k39C1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (v294.1)
J [auth B]	Cullin_AB	e8k39B1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (v294.1)
I [auth A]	Cullin_AB	e8k39A1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (v294.1)
H [auth 7]	Cullin_AB	e8k3971	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (v294.1)
G [auth 6]	Cullin_AB	e8k3961	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (v294.1)
F [auth 5]	Cullin_AB	e8k3951	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (v294.1)
E [auth 4]	Cullin_AB	e8k3941	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (v294.1)
D [auth 3]	Cullin_AB	e8k3931	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (v294.1)
C [auth 2]	Cullin_AB	e8k3921	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (v294.1)
BA [auth T]	Cullin_AB	e8k39T1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (v294.1)
B [auth 1]	Cullin_AB	e8k3911	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (v294.1)
AA [auth S]	Cullin_AB	e8k39S1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (v294.1)
A [auth 0]	Cullin_AB	e8k3901	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
CA [auth U], DA [auth V], EA [auth W], FA [auth X], GA [auth Y], CA [auth U], DA [auth V], EA [auth W], FA [auth X], GA [auth Y], HA [auth Z], IA [auth a], JA [auth b], KA [auth c], LA [auth d], MA [auth e], NA [auth f]	PF05136	Phage portal protein, lambda family (Phage_portal_2)	Phage portal protein, lambda family	-	Family
A [auth 0], AA [auth S], B [auth 1], BA [auth T], C [auth 2], A [auth 0], AA [auth S], B [auth 1], BA [auth T], C [auth 2], D [auth 3], E [auth 4], F [auth 5], G [auth 6], H [auth 7], I [auth A], J [auth B], K [auth C], L [auth D], M [auth E], N [auth F], O [auth G], OA [auth g], P [auth H], PA [auth h], Q [auth I], R [auth J], S [auth K], T [auth L], U [auth M], V [auth N], W [auth O], X [auth P], Y [auth Q], Z [auth R]	PF05136	Phage portal protein, lambda family (Phage_portal_2)	Phage portal protein, lambda family	-	Family
A [auth 0], AA [auth S], B [auth 1], BA [auth T], C [auth 2], A [auth 0], AA [auth S], B [auth 1], BA [auth T], C [auth 2], D [auth 3], E [auth 4], F [auth 5], G [auth 6], H [auth 7], I [auth A], J [auth B], K [auth C], L [auth D], M [auth E], N [auth F], O [auth G], OA [auth g], P [auth H], PA [auth h], Q [auth I], R [auth J], S [auth K], T [auth L], U [auth M], V [auth N], W [auth O], X [auth P], Y [auth Q], Z [auth R]	PF03864	Phage major capsid protein E (Phage_cap_E)	Phage major capsid protein E	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
CA [auth U], DA [auth V], EA [auth W], FA [auth X], GA [auth Y], CA [auth U], DA [auth V], EA [auth W], FA [auth X], GA [auth Y], HA [auth Z], IA [auth a], JA [auth b], KA [auth c], LA [auth d], MA [auth e], NA [auth f]	Portal protein B	DNA binding binding nucleic acid binding structural molecule activity	symbiont genome ejection through host cell envelope biological process involved in interspecies interaction between organisms symbiont genome ejection through host cell envelope, long flexible tail mechanism symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction virion assembly	protein-containing complex viral capsid virion component viral portal complex
A [auth 0], AA [auth S], B [auth 1], BA [auth T], C [auth 2], A [auth 0], AA [auth S], B [auth 1], BA [auth T], C [auth 2], D [auth 3], E [auth 4], F [auth 5], G [auth 6], H [auth 7], I [auth A], J [auth B], K [auth C], L [auth D], M [auth E], N [auth F], O [auth G], OA [auth g], P [auth H], PA [auth h], Q [auth I], R [auth J], S [auth K], T [auth L], U [auth M], V [auth N], W [auth O], X [auth P], Y [auth Q], Z [auth R]	Major capsid protein	-	-	viral capsid icosahedral viral capsid T=7 icosahedral viral capsid virion component host cellular component host intracellular part cellular anatomical structure host cell cytoplasm host cell part host intracellular region other organism part

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
CA [auth U], DA [auth V], EA [auth W], FA [auth X], GA [auth Y], CA [auth U], DA [auth V], EA [auth W], FA [auth X], GA [auth Y], HA [auth Z], IA [auth a], JA [auth b], KA [auth c], LA [auth d], MA [auth e], NA [auth f]	IPR006429	Phage portal protein, lambda family	Family
A [auth 0], AA [auth S], B [auth 1], BA [auth T], C [auth 2], A [auth 0], AA [auth S], B [auth 1], BA [auth T], C [auth 2], D [auth 3], E [auth 4], F [auth 5], G [auth 6], H [auth 7], I [auth A], J [auth B], K [auth C], L [auth D], M [auth E], N [auth F], O [auth G], OA [auth g], P [auth H], PA [auth h], Q [auth I], R [auth J], S [auth K], T [auth L], U [auth M], V [auth N], W [auth O], X [auth P], Y [auth Q], Z [auth R]	IPR005564	Major capsid protein GpE	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.