Annotations: 8K38

The structure of bacteriophage lambda portal-adaptor

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
X	SCOP2B Superfamily	Head-to-tail joining protein W, gpW	8033427	3000920	SCOP2B (2022-06-29)
W	SCOP2B Superfamily	Head-to-tail joining protein W, gpW	8033427	3000920	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	Head-to-tail joining protein W, gpW	8033427	3000920	SCOP2B (2022-06-29)
U	SCOP2B Superfamily	Head-to-tail joining protein W, gpW	8033427	3000920	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	Head-to-tail joining protein W, gpW	8033427	3000920	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	Head-to-tail joining protein W, gpW	8033427	3000920	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	Head-to-tail joining protein W, gpW	8033427	3000920	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	Head-to-tail joining protein W, gpW	8033427	3000920	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	Head-to-tail joining protein W, gpW	8033427	3000920	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	Head-to-tail joining protein W, gpW	8033427	3000920	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Head-to-tail joining protein W, gpW	8033427	3000920	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Head-to-tail joining protein W, gpW	8033427	3000920	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
X	Cullin_AB	e8k38X1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (v294.1)
W	Cullin_AB	e8k38W1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (v294.1)
V	Cullin_AB	e8k38V1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (v294.1)
U	Cullin_AB	e8k38U1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (v294.1)
T	Cullin_AB	e8k38T1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (v294.1)
S	Cullin_AB	e8k38S1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (v294.1)
R	Cullin_AB	e8k38R1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (v294.1)
Q	Cullin_AB	e8k38Q1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (v294.1)
P	Cullin_AB	e8k38P1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (v294.1)
O	Cullin_AB	e8k38O1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (v294.1)
N	Cullin_AB	e8k38N1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (v294.1)
M	Cullin_AB	e8k38M1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Cullin_AB	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF05136	Phage portal protein, lambda family (Phage_portal_2)	Phage portal protein, lambda family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	Portal protein B	DNA binding binding nucleic acid binding structural molecule activity	symbiont genome ejection through host cell envelope biological process involved in interspecies interaction between organisms symbiont genome ejection through host cell envelope, long flexible tail mechanism symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction virion assembly	protein-containing complex viral capsid virion component viral portal complex
M, N, O, P, Q M, N, O, P, Q, R, S, T, U, V, W, X	Head completion protein	-	viral process viral life cycle	virion component

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR006429	Phage portal protein, lambda family	Family
M, N, O, P, Q M, N, O, P, Q, R, S, T, U, V, W, X	IPR036626	Head-to-tail joining protein W superfamily	Homologous Superfamily
M, N, O, P, Q M, N, O, P, Q, R, S, T, U, V, W, X	IPR004174	Head-to-tail joining protein W	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.