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Data API
8JTO
|
pdb_00008jto
Outer membrane porin of Burkholderia pseudomallei (BpsOmp38) in complex with ceftazidime
External Resource: Annotation
Domain Annotation: ECOD Classification
AMR Gene: CARD Annotation
AMR Gene Family: CARD Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD
Domain Annotation: ECOD Classification
ECOD Database Homepage
Chains
Family Name
Domain Identifier
Architecture
Possible Homology
Homology
Topology
Family
Provenance Source (Version)
A
e8jtoA01
A: alpha bundles
X: Helical bundle insertion in helicase domains
H: Helical bundle in Hef helicase
T: Helical bundle in Hef helicase
F:
ECOD (develop294)
AMR Gene: CARD Annotation
CARD Database Homepage
Chains
Accession
Short Name
Description
Provenance Source (Version)
A
ARO:3004123
Burkholderia pseudomallei Omp38
Heterologous expression of Burkholderia pseudomallei Omp38 (BpsOmp38) in Omp-deficient E. coli host cells lowers their permeability and in consequence, their antimicrobial susceptibility to penicillin G, cefoxitin, ceftazidime and imipenem.
CARD (4.0.1)
AMR Gene Family: CARD Annotation
CARD Database Homepage
Chains
Accession
Gene Family
Drug Class
Resistance Machanism
Provenance Source (Version)
A
ARO:3004281
General Bacterial Porin with reduced permeability to beta-lactams
monobactam, carbapenem, cephalosporin, penicillin beta-lactam
reduced permeability to antibiotic
CARD (4.0.1)
Gene Ontology: Gene Product Annotation
Gene Ontology Database Homepage
Chains
Polymer
Molecular Function
Biological Process
Cellular Component
A
Outer membrane porin (Fragment)
wide pore channel activity
passive transmembrane transporter activity
channel activity
porin activity
transporter activity
transmembrane transporter activity
transmembrane transport
localization
transport
monoatomic ion transmembrane transport
monoatomic ion transport
cellular process
establishment of localization
protein-containing complex
cellular anatomical structure
membrane
pore complex
membrane protein complex
cell periphery
cell outer membrane
external encapsulating structure
cell envelope
outer membrane
InterPro: Protein Family Classification
InterPro Database Homepage
Chains
Accession
Name
Type
A
IPR050298
Gram-negative bacterial outer membrane porin
Family
A
IPR033900
Porin domain, Gram-negative type
Domain
A
IPR023614
Porin domain superfamily
Homologous Superfamily
A
IPR002299
Porin, Neisseria sp. type
Family
A
IPR001702
Porin, Gram-negative type
Family
Membrane Protein Annotation: PDBTM
PDBTM Database Homepage
Chains
External Link
Comment
A
PDBTM
Annotated as membrane protein by PDBTM
Membrane Protein Annotation: MemProtMD
MemProtMD Database Homepage
Chains
External Link
Comment
A
MemProtMD
Annotated as membrane protein by MemProtMD
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