8JSH | pdb_00008jsh

Structure of the 30S-body-IF3 complex from Escherichia coli


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
I [auth p]SCOP2B SuperfamilyRibosomal protein S8 8079059 3000709 SCOP2B (2022-06-29)
H [auth n]SCOP2B SuperfamilyRibosomal protein S6 8066495 3001323 SCOP2B (2022-06-29)
G [auth l]SCOP2B SuperfamilyAlpha-L RNA-binding motif 8083400 3001473 SCOP2B (2022-06-29)
D [auth P]SCOP2B SuperfamilyNucleic acid-binding proteins 8059276 3000135 SCOP2B (2022-06-29)
B [auth 2]SCOP2B SuperfamilyRibosomal protein S21 8053090 3002159 SCOP2B (2022-06-29)
N [auth A]SCOP2B SuperfamilyTranslation initiation factor IF3, C-terminal domain 8035754 3001514 SCOP2B (2022-06-29)
M [auth y]SCOP2B SuperfamilyRibosomal protein S16 8106547 3000680 SCOP2B (2022-06-29)
L [auth u]SCOP2B SuperfamilyS15/NS1 RNA-binding domain 8032375 3001284 SCOP2B (2022-06-29)
K [auth t]SCOP2B SuperfamilyNucleic acid-binding proteins 8106545 3000135 SCOP2B (2022-06-29)
J [auth q]SCOP2B SuperfamilyTranslational machinery components 8035368 3000571 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
D [auth P]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17Domain
D [auth P]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8Domain
N [auth A]PF05198Translation initiation factor IF-3, N-terminal domain (IF3_N)Translation initiation factor IF-3, N-terminal domainDomain
N [auth A]PF00707Translation initiation factor IF-3, C-terminal domain (IF3_C)Translation initiation factor IF-3, C-terminal domainDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth p]30S ribosomal protein S8
H [auth n]30S ribosomal protein S6, fully modified isoform
G [auth l]30S ribosomal protein S4
F [auth k]30S ribosomal protein S5
E [auth g]16S ribosomal RNA---
D [auth P]30S ribosomal protein S17
C [auth 3]30S ribosomal protein S20
B [auth 2]30S ribosomal protein S21
N [auth A]Translation initiation factor IF-3
M [auth y]30S ribosomal protein S16
L [auth u]30S ribosomal protein S15
K [auth t]Small ribosomal subunit protein uS12
J [auth q]Small ribosomal subunit protein uS11
A [auth 1]30S ribosomal protein S18

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth p]IPR000630Small ribosomal subunit protein uS8Family
I [auth p]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
I [auth p]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
H [auth n]IPR020815Small ribosomal subunit protein bS6, conserved siteConserved Site
H [auth n]IPR000529Small ribosomal subunit protein bS6Family
H [auth n]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
H [auth n]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
H [auth n]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
G [auth l]IPR002942RNA-binding S4 domainDomain
G [auth l]IPR022801Small ribosomal subunit protein uS4Family
G [auth l]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
G [auth l]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
G [auth l]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
G [auth l]IPR005709Small ribosomal subunit protein uS4, bacteriaFamily
F [auth k]IPR000851Small ribosomal subunit protein uS5Family
F [auth k]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
F [auth k]IPR005712Small ribosomal subunit protein uS5, bacteriaFamily
F [auth k]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
F [auth k]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
F [auth k]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
F [auth k]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
D [auth P]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
D [auth P]IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
D [auth P]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
D [auth P]IPR000266Small ribosomal subunit protein uS17Family
C [auth 3]IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
C [auth 3]IPR002583Small ribosomal subunit protein bS20Family
B [auth 2]IPR038380Small ribosomal subunit protein bS21 superfamilyHomologous Superfamily
B [auth 2]IPR018278Small ribosomal subunit protein bS21, conserved siteConserved Site
B [auth 2]IPR001911Small ribosomal subunit protein bS21Family
N [auth A]IPR019815Translation initiation factor 3, C-terminalDomain
N [auth A]IPR001288Translation initiation factor 3Family
N [auth A]IPR019814Translation initiation factor 3, N-terminalDomain
N [auth A]IPR036788Translation initiation factor 3 (IF-3), C-terminal domain superfamilyHomologous Superfamily
N [auth A]IPR036787Translation initiation factor 3 (IF-3), N-terminal domain superfamilyHomologous Superfamily
N [auth A]IPR019813Translation initiation factor 3, conserved siteConserved Site
M [auth y]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
M [auth y]IPR000307Small ribosomal subunit protein bS16Family
M [auth y]IPR020592Small ribosomal subunit protein bS16, conserved siteConserved Site
L [auth u]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
L [auth u]IPR000589Small ribosomal subunit protein uS15Family
L [auth u]IPR005290Small ribosomal subunit protein uS15, bacteriaFamily
K [auth t]IPR005679Ribosomal protein uS12, bacteriaFamily
K [auth t]IPR006032Small ribosomal subunit protein uS12Family
K [auth t]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
J [auth q]IPR001971Small ribosomal subunit protein uS11Family
J [auth q]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
J [auth q]IPR019981Small ribosomal subunit protein uS11, bacteriaFamily
J [auth q]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
A [auth 1]IPR001648Small ribosomal subunit protein bS18Family
A [auth 1]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
A [auth 1]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily