8JRE | pdb_00008jre

Cryo-EM structure of a designed AAV8-based vector

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A [auth 1]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
AA [auth 2]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
AB [auth s]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
BA [auth 3]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
C [auth B]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
CA [auth 4]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
CB [auth u]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
D [auth C]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
DA [auth 5]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
E [auth D]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
EA [auth 6]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
F [auth E]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
FA [auth 7]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
G [auth F]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
GB [auth y]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
H [auth G]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
HA [auth 9]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
HB [auth z]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
I [auth H]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
IA [auth a]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
J [auth I]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
JA [auth b]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
KA [auth c]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
L [auth K]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
LA [auth d]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
M [auth L]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
MA [auth e]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
N [auth M]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
O [auth N]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
PA [auth h]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
Q [auth P]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
R [auth Q]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
RA [auth j]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
S [auth R]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
SA [auth l]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
T [auth S]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
U [auth T]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
VA [auth n]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
X	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
XA [auth p]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
Y	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
YA [auth q]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
Z	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
ZA [auth r]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
WA [auth o]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
W	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
UA [auth m]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
TA [auth k]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
QA [auth i]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
P [auth O]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
OA [auth g]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
NA [auth f]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
K [auth J]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
GA [auth 8]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
FB [auth x]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
EB [auth w]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
DB [auth v]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
BB [auth t]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
B [auth A]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth 1], AA [auth 2], AB [auth s], B [auth A], BA [auth 3], A [auth 1], AA [auth 2], AB [auth s], B [auth A], BA [auth 3], BB [auth t], C [auth B], CA [auth 4], CB [auth u], D [auth C], DA [auth 5], DB [auth v], E [auth D], EA [auth 6], EB [auth w], F [auth E], FA [auth 7], FB [auth x], G [auth F], GA [auth 8], GB [auth y], H [auth G], HA [auth 9], HB [auth z], I [auth H], IA [auth a], J [auth I], JA [auth b], K [auth J], KA [auth c], L [auth K], LA [auth d], M [auth L], MA [auth e], N [auth M], NA [auth f], O [auth N], OA [auth g], P [auth O], PA [auth h], Q [auth P], QA [auth i], R [auth Q], RA [auth j], S [auth R], SA [auth l], T [auth S], TA [auth k], U [auth T], UA [auth m], V, VA [auth n], W, WA [auth o], X, XA [auth p], Y, YA [auth q], Z, ZA [auth r]	PF00740	Parvovirus coat protein VP1/VP2 (VP1_2)	Parvovirus coat protein VP1/VP2	This entry describes a common domain found in VP1 and VP2 Parvovirus coat proteins which together form a capsomer. Both of these proteins are formed from the same transcript using alternative splicing. As a result, VP1 and VP2 differ only in the N-te ...	This entry describes a common domain found in VP1 and VP2 Parvovirus coat proteins which together form a capsomer. Both of these proteins are formed from the same transcript using alternative splicing. As a result, VP1 and VP2 differ only in the N-terminal. VP2 is involved in packaging of the viral DNA [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth 1], AA [auth 2], AB [auth s], B [auth A], BA [auth 3], A [auth 1], AA [auth 2], AB [auth s], B [auth A], BA [auth 3], BB [auth t], C [auth B], CA [auth 4], CB [auth u], D [auth C], DA [auth 5], DB [auth v], E [auth D], EA [auth 6], EB [auth w], F [auth E], FA [auth 7], FB [auth x], G [auth F], GA [auth 8], GB [auth y], H [auth G], HA [auth 9], HB [auth z], I [auth H], IA [auth a], J [auth I], JA [auth b], K [auth J], KA [auth c], L [auth K], LA [auth d], M [auth L], MA [auth e], N [auth M], NA [auth f], O [auth N], OA [auth g], P [auth O], PA [auth h], Q [auth P], QA [auth i], R [auth Q], RA [auth j], S [auth R], SA [auth l], T [auth S], TA [auth k], U [auth T], UA [auth m], V, VA [auth n], W, WA [auth o], X, XA [auth p], Y, YA [auth q], Z, ZA [auth r]	Capsid protein	structural molecule activity binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding	-	viral capsid icosahedral viral capsid virion component T=1 icosahedral viral capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth 1], AA [auth 2], AB [auth s], B [auth A], BA [auth 3], A [auth 1], AA [auth 2], AB [auth s], B [auth A], BA [auth 3], BB [auth t], C [auth B], CA [auth 4], CB [auth u], D [auth C], DA [auth 5], DB [auth v], E [auth D], EA [auth 6], EB [auth w], F [auth E], FA [auth 7], FB [auth x], G [auth F], GA [auth 8], GB [auth y], H [auth G], HA [auth 9], HB [auth z], I [auth H], IA [auth a], J [auth I], JA [auth b], K [auth J], KA [auth c], L [auth K], LA [auth d], M [auth L], MA [auth e], N [auth M], NA [auth f], O [auth N], OA [auth g], P [auth O], PA [auth h], Q [auth P], QA [auth i], R [auth Q], RA [auth j], S [auth R], SA [auth l], T [auth S], TA [auth k], U [auth T], UA [auth m], V, VA [auth n], W, WA [auth o], X, XA [auth p], Y, YA [auth q], Z, ZA [auth r]	IPR013607	Phospholipase A2-like domain	Domain
A [auth 1], AA [auth 2], AB [auth s], B [auth A], BA [auth 3], A [auth 1], AA [auth 2], AB [auth s], B [auth A], BA [auth 3], BB [auth t], C [auth B], CA [auth 4], CB [auth u], D [auth C], DA [auth 5], DB [auth v], E [auth D], EA [auth 6], EB [auth w], F [auth E], FA [auth 7], FB [auth x], G [auth F], GA [auth 8], GB [auth y], H [auth G], HA [auth 9], HB [auth z], I [auth H], IA [auth a], J [auth I], JA [auth b], K [auth J], KA [auth c], L [auth K], LA [auth d], M [auth L], MA [auth e], N [auth M], NA [auth f], O [auth N], OA [auth g], P [auth O], PA [auth h], Q [auth P], QA [auth i], R [auth Q], RA [auth j], S [auth R], SA [auth l], T [auth S], TA [auth k], U [auth T], UA [auth m], V, VA [auth n], W, WA [auth o], X, XA [auth p], Y, YA [auth q], Z, ZA [auth r]	IPR016184	Capsid/spike protein, ssDNA virus	Homologous Superfamily
A [auth 1], AA [auth 2], AB [auth s], B [auth A], BA [auth 3], A [auth 1], AA [auth 2], AB [auth s], B [auth A], BA [auth 3], BB [auth t], C [auth B], CA [auth 4], CB [auth u], D [auth C], DA [auth 5], DB [auth v], E [auth D], EA [auth 6], EB [auth w], F [auth E], FA [auth 7], FB [auth x], G [auth F], GA [auth 8], GB [auth y], H [auth G], HA [auth 9], HB [auth z], I [auth H], IA [auth a], J [auth I], JA [auth b], K [auth J], KA [auth c], L [auth K], LA [auth d], M [auth L], MA [auth e], N [auth M], NA [auth f], O [auth N], OA [auth g], P [auth O], PA [auth h], Q [auth P], QA [auth i], R [auth Q], RA [auth j], S [auth R], SA [auth l], T [auth S], TA [auth k], U [auth T], UA [auth m], V, VA [auth n], W, WA [auth o], X, XA [auth p], Y, YA [auth q], Z, ZA [auth r]	IPR001403	Coat protein VP1/VP2, Parvovirus	Domain
A [auth 1], AA [auth 2], AB [auth s], B [auth A], BA [auth 3], A [auth 1], AA [auth 2], AB [auth s], B [auth A], BA [auth 3], BB [auth t], C [auth B], CA [auth 4], CB [auth u], D [auth C], DA [auth 5], DB [auth v], E [auth D], EA [auth 6], EB [auth w], F [auth E], FA [auth 7], FB [auth x], G [auth F], GA [auth 8], GB [auth y], H [auth G], HA [auth 9], HB [auth z], I [auth H], IA [auth a], J [auth I], JA [auth b], K [auth J], KA [auth c], L [auth K], LA [auth d], M [auth L], MA [auth e], N [auth M], NA [auth f], O [auth N], OA [auth g], P [auth O], PA [auth h], Q [auth P], QA [auth i], R [auth Q], RA [auth j], S [auth R], SA [auth l], T [auth S], TA [auth k], U [auth T], UA [auth m], V, VA [auth n], W, WA [auth o], X, XA [auth p], Y, YA [auth q], Z, ZA [auth r]	IPR036952	Parvovirus coat protein VP1/VP2	Homologous Superfamily