8JRD | pdb_00008jrd

Chalcone synthase from Glycine max (L.) Merr (soybean) complexed with naringenin and coenzyme A

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Thiolase-like	8101795	3000122	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Thiolase-like	8098596	3000122	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Thiolase-like	8101795	3000122	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Thiolase-like	8098596	3000122	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00195	Chalcone and stilbene synthases, N-terminal domain (Chal_sti_synt_N)	Chalcone and stilbene synthases, N-terminal domain	The C-terminal domain of Chalcone synthase is reported to be structurally similar to domains in thiolase and beta-ketoacyl synthase. The differences in activity are accounted for by differences in this N-terminal domain.	Domain
A, B	PF02797	Chalcone and stilbene synthases, C-terminal domain (Chal_sti_synt_C)	Chalcone and stilbene synthases, C-terminal domain	This domain of chalcone synthase is reported to be structurally similar to domains in thiolase and beta-ketoacyl synthase. The differences in activity are accounted for by differences in the N-terminal domain.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	chalcone synthase	acyltransferase activity acyltransferase activity, transferring groups other than amino-acyl groups transferase activity catalytic activity naringenin-chalcone synthase activity	flavonoid metabolic process flavonoid biosynthetic process biosynthetic process metabolic process cellular process polyketide biosynthetic process secondary metabolite biosynthetic process polyketide metabolic process secondary metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR001099	Chalcone/stilbene synthase, N-terminal	Domain
A, B	IPR016039	Thiolase-like	Homologous Superfamily
A, B	IPR012328	Chalcone/stilbene synthase, C-terminal	Domain
A, B	IPR011141	Polyketide synthase, type III	Family
A, B	IPR018088	Chalcone/stilbene synthase, active site	Active Site

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A, B	CSD	Parent Component: CYS RESID: AA0262 PSI-MOD : L-cysteine sulfinic acid MOD:00267
A, B	SME	Parent Component: MET RESID: AA0262 , AA0581 PSI-MOD : L-cysteine sulfinic acid MOD:00267 , L-methionine (S)-sulfoxide MOD:00721

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.