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 8JQN | pdb_00008jqn

CryoEM structure of sNS1 complexed with Fab 2E11

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
C [auth h]V-sete8jqnh1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: V-setECOD (v295.2)
A [auth H]e8jqnH01 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF:ECOD (v295.2)
D [auth l]V-sete8jqnl1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: V-setECOD (v295.2)
B [auth L]e8jqnL01 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF:ECOD (v295.2)
F [auth A]V-sete8jqnA1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: V-setECOD (v295.2)
E [auth a]V-sete8jqna1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: V-setECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth H],
C [auth h]		2E11 Fab Heavy Chain---
B [auth L],
D [auth l]		2E11 Fab Light Chain---
E [auth a],
F [auth A]		Non-structural protein 1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
E [auth a],
F [auth A]		IPR000208RNA-directed RNA polymerase, fingers/palm subdomains, flavivirusDomain
E [auth a],
F [auth A]		IPR014756Immunoglobulin E-setHomologous Superfamily
E [auth a],
F [auth A]		IPR001122Capsid protein C, flavivirusDomain
E [auth a],
F [auth A]		IPR027287Glycoprotein E, immunoglobulin-like domain, flavivirusDomain
E [auth a],
F [auth A]		IPR014412Genome polyprotein, FlavivirusFamily
E [auth a],
F [auth A]		IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
E [auth a],
F [auth A]		IPR011492Non-structural protein NS3-like, DEAD-box helicase, flavivirusDomain
E [auth a],
F [auth A]		IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
E [auth a],
F [auth A]		IPR026490mRNA cap 0/1 methyltransferaseDomain
E [auth a],
F [auth A]		IPR009003Peptidase S1, PA clanHomologous Superfamily
E [auth a],
F [auth A]		IPR001650Helicase, C-terminal domain-likeDomain
E [auth a],
F [auth A]		IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
E [auth a],
F [auth A]		IPR013755Flaviviral glycoprotein E, central domain, subdomain 1Homologous Superfamily
E [auth a],
F [auth A]		IPR000752Flavivirus non-structural protein NS2ADomain
E [auth a],
F [auth A]		IPR047530RNA-dependent RNA polymerase, flavivirusDomain
E [auth a],
F [auth A]		IPR049486Flavivridae NS3 helicase, C-terminal helical domainDomain
E [auth a],
F [auth A]		IPR046811RNA-directed RNA polymerase, thumb subdomain, flavivirusDomain
E [auth a],
F [auth A]		IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
E [auth a],
F [auth A]		IPR002877Ribosomal RNA methyltransferase, FtsJ domainDomain
E [auth a],
F [auth A]		IPR038302Envelope glycoprotein M superfamily, flavivirusHomologous Superfamily
E [auth a],
F [auth A]		IPR000069Envelope glycoprotein M, flavivirusDomain
E [auth a],
F [auth A]		IPR038345Flavivirus envelope glycoprotein E, Stem/Anchor domain superfamilyHomologous Superfamily
E [auth a],
F [auth A]		IPR038688Flavivirus polyprotein propeptide superfamilyHomologous Superfamily
E [auth a],
F [auth A]		IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
E [auth a],
F [auth A]		IPR026470Flavivirus envelope glycoprotein E, Stem/Anchor domainDomain
E [auth a],
F [auth A]		IPR011998Envelope glycoprotein E, central and dimerisation domain, flavivirusDomain
E [auth a],
F [auth A]		IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
E [auth a],
F [auth A]		IPR037172Flavivirus capsid protein C superfamilyHomologous Superfamily
E [auth a],
F [auth A]		IPR000404Flavivirus non-structural protein NS4ADomain
E [auth a],
F [auth A]		IPR000487Non-structural protein NS2B, flavivirusDomain
E [auth a],
F [auth A]		IPR001528Flavivirus non-structural protein NS4BDomain
E [auth a],
F [auth A]		IPR001157Non-structural protein NS1, flavivirusDomain
E [auth a],
F [auth A]		IPR013756Flaviviral glycoprotein E, central domain, subdomain 2Homologous Superfamily
E [auth a],
F [auth A]		IPR001850Non-structural protein NS3, peptidase S7, flavivirusDomain
E [auth a],
F [auth A]		IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily
E [auth a],
F [auth A]		IPR002535Flavivirus polyprotein propeptideDomain
E [auth a],
F [auth A]		IPR007094RNA-directed RNA polymerase, catalytic domainDomain