8JIF | pdb_00008jif

Cryo-EM Structure of 3-axis block of AAV9P31-Car4 complex

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A [auth R]	SCOP2B Superfamily	Carbonic anhydrase	8042991	3001672	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth R]	PF00194	Eukaryotic-type carbonic anhydrase (Carb_anhydrase)	Eukaryotic-type carbonic anhydrase		Domain
B [auth A], C [auth B], D [auth C]	PF00740	Parvovirus coat protein VP1/VP2 (VP1_2)	Parvovirus coat protein VP1/VP2	This entry describes a common domain found in VP1 and VP2 Parvovirus coat proteins which together form a capsomer. Both of these proteins are formed from the same transcript using alternative splicing. As a result, VP1 and VP2 differ only in the N-te ...	This entry describes a common domain found in VP1 and VP2 Parvovirus coat proteins which together form a capsomer. Both of these proteins are formed from the same transcript using alternative splicing. As a result, VP1 and VP2 differ only in the N-terminal. VP2 is involved in packaging of the viral DNA [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth R]	Carbonic anhydrase 4	cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding carbonate dehydratase activity hydro-lyase activity lyase activity catalytic activity carbon-oxygen lyase activity	localization one-carbon compound transport transport gas transport carbon dioxide transport establishment of localization chemical homeostasis homeostatic process regulation of pH biological regulation monoatomic ion homeostasis monoatomic cation homeostasis bicarbonate transport organic anion transport	cell periphery cellular anatomical structure cell surface membrane plasma membrane external side of plasma membrane side of membrane membrane-bounded organelle intracellular anatomical structure intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle membrane cell periphery cellular anatomical structure cell surface membrane plasma membrane external side of plasma membrane side of membrane membrane-bounded organelle intracellular anatomical structure intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle membrane bounding membrane of organelle vesicle membrane cytoplasmic vesicle organelle secretory granule secretory vesicle cytoplasm vesicle organelle membrane secretory granule membrane Golgi apparatus subcompartment Golgi apparatus organelle subcompartment trans-Golgi network apical part of cell plasma membrane region apical plasma membrane extracellular exosome extracellular vesicle extracellular organelle extracellular region extracellular space extracellular membrane-bounded organelle perinuclear region of cytoplasm brush border membrane cluster of actin-based cell projections plasma membrane bounded cell projection brush border cell projection cell projection membrane endoplasmic reticulum-Golgi intermediate compartment transport vesicle transport vesicle membrane rough endoplasmic reticulum endoplasmic reticulum
B [auth A], C [auth B], D [auth C]	Capsid protein VP1	structural molecule activity	-	viral capsid icosahedral viral capsid virion component T=1 icosahedral viral capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth R]	IPR018338	Carbonic anhydrase, alpha-class, conserved site	Conserved Site
A [auth R]	IPR041874	Carbonic anhydrase, CA4/CA15	Family
A [auth R]	IPR001148	Alpha carbonic anhydrase domain	Domain
A [auth R]	IPR036398	Alpha carbonic anhydrase domain superfamily	Homologous Superfamily
A [auth R]	IPR023561	Carbonic anhydrase, alpha-class	Family
B [auth A], C [auth B], D [auth C]	IPR013607	Phospholipase A2-like domain	Domain
B [auth A], C [auth B], D [auth C]	IPR016184	Capsid/spike protein, ssDNA virus	Homologous Superfamily
B [auth A], C [auth B], D [auth C]	IPR001403	Coat protein VP1/VP2, Parvovirus	Domain
B [auth A], C [auth B], D [auth C]	IPR036952	Parvovirus coat protein VP1/VP2	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.