8J8T | pdb_00008j8t

Crystal structure of calcium-saturated SRCR domain 11 of DMBT1

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Peptidase_M61_N	e8j8tA01	A: a/b three-layered sandwiches	X: ATP-grasp_6	H: ATP-grasp_6	T: ATP-grasp_6	F: Peptidase_M61_N	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00530	Scavenger receptor cysteine-rich domain (SRCR)	Scavenger receptor cysteine-rich domain	These domains are disulphide rich extracellular domains. These domains are found in several extracellular receptors and may be involved in protein-protein interactions.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Deleted in malignant brain tumors 1 protein	molecular transducer activity pattern recognition receptor activity signaling receptor activity cargo receptor activity scavenger receptor activity protein binding binding enzyme binding zymogen binding calcium-dependent protein binding	localization establishment of protein localization protein transport transport macromolecule localization intracellular protein localization establishment of localization biological process involved in interspecies interaction between organisms response to stimulus immune response response to other organism defense response defense response to symbiont response to external stimulus localization establishment of protein localization protein transport transport macromolecule localization intracellular protein localization establishment of localization biological process involved in interspecies interaction between organisms response to stimulus immune response response to other organism defense response defense response to symbiont response to external stimulus response to biotic stimulus immune system process defense response to other organism response to stress innate immune response response to external biotic stimulus developmental process epithelium development cellular developmental process cell differentiation anatomical structure development cellular process tissue development epithelial cell differentiation defense response to Gram-negative bacterium defense response to bacterium response to bacterium humoral immune response antibacterial humoral response antimicrobial humoral response induction of bacterial agglutination defense response to virus response to virus defense response to Gram-positive bacterium	extracellular exosome membrane-bounded organelle extracellular vesicle cellular anatomical structure extracellular organelle extracellular region organelle vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm extracellular matrix external encapsulating structure membrane extracellular exosome membrane-bounded organelle extracellular vesicle cellular anatomical structure extracellular organelle extracellular region organelle vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm extracellular matrix external encapsulating structure membrane intracellular vesicle phagocytic vesicle intracellular membrane-bounded organelle intracellular organelle phagocytic vesicle membrane cytoplasmic vesicle membrane bounding membrane of organelle cytoplasmic vesicle vesicle membrane endocytic vesicle membrane organelle membrane endocytic vesicle zymogen granule zymogen granule membrane endomembrane system secretory granule secretory vesicle secretory granule membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR042235	Zona pellucida, ZP-C domain	Homologous Superfamily
A, B	IPR055356	ZP-N domain	Domain
A, B	IPR035914	Spermadhesin, CUB domain superfamily	Homologous Superfamily
A, B	IPR055355	ZP-C domain	Domain
A, B	IPR000859	CUB domain	Domain
A, B	IPR017977	Zona pellucida domain, conserved site	Conserved Site
A, B	IPR001190	SRCR domain	Domain
A, B	IPR036772	SRCR-like domain superfamily	Homologous Superfamily
A, B	IPR001507	Zona pellucida domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: Q9UGM3	malignant colon neoplasm glioma oligodendroglioma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia ulcerative colitis age-related macular degeneration benign colon neoplasm cystic fibrosis glioblastoma lung adenocarcinoma medulloblastoma osteosarcoma sinusitis wet macular degeneration astrocytic tumor malignant colon neoplasm glioma oligodendroglioma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia ulcerative colitis age-related macular degeneration benign colon neoplasm cystic fibrosis glioblastoma lung adenocarcinoma medulloblastoma osteosarcoma sinusitis wet macular degeneration astrocytic tumor colonic neoplasm esophageal adenocarcinoma lung cancer malignant glioma non-small cell lung carcinoma pancreatic intraductal papillary-mucinous neoplasm transitional cell carcinoma Barrett esophagus Crohn disease facioscapulohumeral muscular dystrophy heart disease lung carcinoma malignant pancreatic neoplasm

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.