8J62
Cryo-EM structure of APOBEC3G-Vif complex
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF18782 | e8j62A1 | A: a+b three layers | X: Cytidine deaminase-like (From Topology) | H: Cytidine deaminase-like (From Topology) | T: Cytidine deaminase-like | F: PF18782 | ECOD (1.6) |
G [auth B] | PF18782 | e8j62B1 | A: a+b three layers | X: Cytidine deaminase-like (From Topology) | H: Cytidine deaminase-like (From Topology) | T: Cytidine deaminase-like | F: PF18782 | ECOD (1.6) |
B [auth C] | PF00559 | e8j62C1 | A: a+b two layers | X: Virion infectivity factor Vif (From Topology) | H: Virion infectivity factor Vif (From Topology) | T: Virion infectivity factor Vif | F: PF00559 | ECOD (1.6) |
D [auth E] | PF00559 | e8j62E1 | A: a+b two layers | X: Virion infectivity factor Vif (From Topology) | H: Virion infectivity factor Vif (From Topology) | T: Virion infectivity factor Vif | F: PF00559 | ECOD (1.6) |
H [auth G] | PF00559 | e8j62G1 | A: a+b two layers | X: Virion infectivity factor Vif (From Topology) | H: Virion infectivity factor Vif (From Topology) | T: Virion infectivity factor Vif | F: PF00559 | ECOD (1.6) |
J [auth I] | PF00559 | e8j62I1 | A: a+b two layers | X: Virion infectivity factor Vif (From Topology) | H: Virion infectivity factor Vif (From Topology) | T: Virion infectivity factor Vif | F: PF00559 | ECOD (1.6) |
C [auth D] | PF02312 | e8j62D1 | A: beta barrels | X: CBF-like | H: Core binding factor beta, CBF (From Topology) | T: Core binding factor beta, CBF | F: PF02312 | ECOD (1.6) |
E [auth F] | PF02312 | e8j62F1 | A: beta barrels | X: CBF-like | H: Core binding factor beta, CBF (From Topology) | T: Core binding factor beta, CBF | F: PF02312 | ECOD (1.6) |
I [auth H] | PF02312 | e8j62H1 | A: beta barrels | X: CBF-like | H: Core binding factor beta, CBF (From Topology) | T: Core binding factor beta, CBF | F: PF02312 | ECOD (1.6) |
K [auth J] | PF02312 | e8j62J1 | A: beta barrels | X: CBF-like | H: Core binding factor beta, CBF (From Topology) | T: Core binding factor beta, CBF | F: PF02312 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
C [auth D], E [auth F], I [auth H], K [auth J] | PF02312 | Core binding factor beta subunit (CBF_beta) | Core binding factor beta subunit | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, G [auth B] | IPR016193 | Cytidine deaminase-like | Homologous Superfamily |
A, G [auth B] | IPR002125 | Cytidine and deoxycytidylate deaminase domain | Domain |
A, G [auth B] | IPR016192 | APOBEC/CMP deaminase, zinc-binding | Binding Site |
B [auth C], D [auth E], H [auth G], J [auth I] | IPR000475 | Retroviral Vif (Viral infectivity) protein | Family |
C [auth D], E [auth F], I [auth H], K [auth J] | IPR003417 | Core-binding factor, beta subunit | Family |
C [auth D], E [auth F], I [auth H], K [auth J] | IPR036552 | Core-binding factor, beta subunit superfamily | Homologous Superfamily |