8IWH

Structure and characteristics of a photosystem II supercomplex containing monomeric LHCX and dimeric FCPII antennae from the diatom Thalassiosira pseudonana


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF00124e8iwhA1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PF00124ECOD (1.6)
TA [auth a]PF00124e8iwha1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PF00124ECOD (1.6)
Q [auth J]PF01788e8iwhJ1 A: extended segmentsX: Photosystem II reaction center protein J, PsbJ (From Topology)H: Photosystem II reaction center protein J, PsbJ (From Topology)T: Photosystem II reaction center protein J, PsbJF: PF01788ECOD (1.6)
R [auth j]PF01788e8iwhj1 A: extended segmentsX: Photosystem II reaction center protein J, PsbJ (From Topology)H: Photosystem II reaction center protein J, PsbJ (From Topology)T: Photosystem II reaction center protein J, PsbJF: PF01788ECOD (1.6)
S [auth K]PF02533e8iwhK1 A: extended segmentsX: Photosystem II reaction center protein K, PsbK (From Topology)H: Photosystem II reaction center protein K, PsbK (From Topology)T: Photosystem II reaction center protein K, PsbKF: PF02533ECOD (1.6)
T [auth k]PF02533e8iwhk1 A: extended segmentsX: Photosystem II reaction center protein K, PsbK (From Topology)H: Photosystem II reaction center protein K, PsbK (From Topology)T: Photosystem II reaction center protein K, PsbKF: PF02533ECOD (1.6)
U [auth L]PF02419e8iwhL1 A: extended segmentsX: Photosystem II reaction center protein L, PsbL (From Topology)H: Photosystem II reaction center protein L, PsbL (From Topology)T: Photosystem II reaction center protein L, PsbLF: PF02419ECOD (1.6)
V [auth l]PF02419e8iwhl1 A: extended segmentsX: Photosystem II reaction center protein L, PsbL (From Topology)H: Photosystem II reaction center protein L, PsbL (From Topology)T: Photosystem II reaction center protein L, PsbLF: PF02419ECOD (1.6)
W [auth M]F_UNCLASSIFIEDe8iwhM1 A: extended segmentsX: Photosystem II reaction center protein M, PsbM (From Topology)H: Photosystem II reaction center protein M, PsbM (From Topology)T: Photosystem II reaction center protein M, PsbMF: F_UNCLASSIFIEDECOD (1.6)
X [auth m]F_UNCLASSIFIEDe8iwhm1 A: extended segmentsX: Photosystem II reaction center protein M, PsbM (From Topology)H: Photosystem II reaction center protein M, PsbM (From Topology)T: Photosystem II reaction center protein M, PsbMF: F_UNCLASSIFIEDECOD (1.6)
AA [auth O]PF01716e8iwhO1 A: beta barrelsX: Outer membrane meander beta-barrelsH: OMPA-like (From Topology)T: OMPA-likeF: PF01716ECOD (1.6)
BA [auth o]PF01716e8iwho1 A: beta barrelsX: Outer membrane meander beta-barrelsH: OMPA-like (From Topology)T: OMPA-likeF: PF01716ECOD (1.6)
CA [auth T]PF01405e8iwhT1 A: extended segmentsX: Photosystem II reaction center protein T, PsbT (From Topology)H: Photosystem II reaction center protein T, PsbT (From Topology)T: Photosystem II reaction center protein T, PsbTF: PF01405ECOD (1.6)
DA [auth t]PF01405e8iwht1 A: extended segmentsX: Photosystem II reaction center protein T, PsbT (From Topology)H: Photosystem II reaction center protein T, PsbT (From Topology)T: Photosystem II reaction center protein T, PsbTF: PF01405ECOD (1.6)
EA [auth U]PF06514e8iwhU1 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: SAM domain-likeF: PF06514ECOD (1.6)
FA [auth u]PF06514e8iwhu1 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: SAM domain-likeF: PF06514ECOD (1.6)
GA [auth V]PF14495e8iwhV1 A: alpha arraysX: Cytochrome c-likeH: Cytochrome c (From Topology)T: Cytochrome cF: PF14495ECOD (1.6)
HA [auth v]PF14495e8iwhv1 A: alpha arraysX: Cytochrome c-likeH: Cytochrome c (From Topology)T: Cytochrome cF: PF14495ECOD (1.6)
IA [auth W]F_UNCLASSIFIEDe8iwhW1 A: extended segmentsX: Photosystem II reaction center W protein, chloroplastic (From Topology)H: Photosystem II reaction center W protein, chloroplastic (From Topology)T: Photosystem II reaction center W protein, chloroplasticF: F_UNCLASSIFIEDECOD (1.6)
JA [auth w]F_UNCLASSIFIEDe8iwhw1 A: extended segmentsX: Photosystem II reaction center W protein, chloroplastic (From Topology)H: Photosystem II reaction center W protein, chloroplastic (From Topology)T: Photosystem II reaction center W protein, chloroplasticF: F_UNCLASSIFIEDECOD (1.6)
UA [auth b]PF00421e8iwhb1 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PF00421ECOD (1.6)
UA [auth b]PF00421e8iwhb2 A: a+b two layersX: Photosystem II antenna protein PsbB insertion domain (From Topology)H: Photosystem II antenna protein PsbB insertion domain (From Topology)T: Photosystem II antenna protein PsbB insertion domainF: PF00421ECOD (1.6)
BPF00421e8iwhB2 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PF00421ECOD (1.6)
BPF00421e8iwhB1 A: a+b two layersX: Photosystem II antenna protein PsbB insertion domain (From Topology)H: Photosystem II antenna protein PsbB insertion domain (From Topology)T: Photosystem II antenna protein PsbB insertion domainF: PF00421ECOD (1.6)
KA [auth X]PF06596e8iwhX1 A: extended segmentsX: Photosystem II PsbX protein (From Topology)H: Photosystem II PsbX protein (From Topology)T: Photosystem II PsbX proteinF: PF06596ECOD (1.6)
LA [auth x]PF06596e8iwhx1 A: extended segmentsX: Photosystem II PsbX protein (From Topology)H: Photosystem II PsbX protein (From Topology)T: Photosystem II PsbX proteinF: PF06596ECOD (1.6)
MA [auth Z]PF01737e8iwhZ1 A: extended segmentsX: PsbZ-like (From Topology)H: PsbZ-like (From Topology)T: PsbZ-likeF: PF01737ECOD (1.6)
NA [auth z]PF01737e8iwhz1 A: extended segmentsX: PsbZ-like (From Topology)H: PsbZ-like (From Topology)T: PsbZ-likeF: PF01737ECOD (1.6)
OA [auth 3]PF00504e8iwh31 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
PA [auth 4]PF00504e8iwh41 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
QA [auth 5]PF00504e8iwh51 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
RA [auth 6]PF00504e8iwh61 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
ZA [auth 0]PF00504e8iwh01 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
SA [auth 7]PF00504e8iwh71 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
VA [auth Y]PF05969e8iwhY1 A: extended segmentsX: Photosystem II reaction center protein ycf12 (From Topology)H: Photosystem II reaction center protein ycf12 (From Topology)T: Photosystem II reaction center protein ycf12F: PF05969ECOD (1.6)
WA [auth y]PF05969e8iwhy1 A: extended segmentsX: Photosystem II reaction center protein ycf12 (From Topology)H: Photosystem II reaction center protein ycf12 (From Topology)T: Photosystem II reaction center protein ycf12F: PF05969ECOD (1.6)
XA [auth Q]F_UNCLASSIFIEDe8iwhQ1 A: alpha bundlesX: Four-helical up-and-down bundleH: Oxygen-evolving enhancer protein 3 (From Topology)T: Oxygen-evolving enhancer protein 3F: F_UNCLASSIFIEDECOD (1.6)
YA [auth q]F_UNCLASSIFIEDe8iwhq1 A: alpha bundlesX: Four-helical up-and-down bundleH: Oxygen-evolving enhancer protein 3 (From Topology)T: Oxygen-evolving enhancer protein 3F: F_UNCLASSIFIEDECOD (1.6)
AB [auth 9]PF00504e8iwh91 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
BB [auth 2]PF00504e8iwh21 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
DB [auth 1]PF00504e8iwh11 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
CB [auth 8]PF00504e8iwh81 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: PF00504ECOD (1.6)
CPF00421e8iwhC1 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PF00421ECOD (1.6)
D [auth c]PF00421e8iwhc1 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PF00421ECOD (1.6)
E [auth D]PF00124e8iwhD1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PF00124ECOD (1.6)
F [auth d]PF00124e8iwhd1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PF00124ECOD (1.6)
G [auth E]PF00283,PF00284e8iwhE1 A: extended segmentsX: Cytochrome b559 subunits (From Topology)H: Cytochrome b559 subunits (From Topology)T: Cytochrome b559 subunitsF: PF00283,PF00284ECOD (1.6)
H [auth e]PF00283,PF00284e8iwhe1 A: extended segmentsX: Cytochrome b559 subunits (From Topology)H: Cytochrome b559 subunits (From Topology)T: Cytochrome b559 subunitsF: PF00283,PF00284ECOD (1.6)
I [auth F]PF00283e8iwhF1 A: extended segmentsX: Cytochrome b559 subunits (From Topology)H: Cytochrome b559 subunits (From Topology)T: Cytochrome b559 subunitsF: PF00283ECOD (1.6)
J [auth f]PF00283e8iwhf1 A: extended segmentsX: Cytochrome b559 subunits (From Topology)H: Cytochrome b559 subunits (From Topology)T: Cytochrome b559 subunitsF: PF00283ECOD (1.6)
K [auth G]PF18240e8iwhG1 A: alpha bundlesX: Four-helical up-and-down bundleH: Oxygen-evolving enhancer protein 3 (From Topology)T: Oxygen-evolving enhancer protein 3F: PF18240ECOD (1.6)
L [auth g]PF18240e8iwhg1 A: alpha bundlesX: Four-helical up-and-down bundleH: Oxygen-evolving enhancer protein 3 (From Topology)T: Oxygen-evolving enhancer protein 3F: PF18240ECOD (1.6)
M [auth H]PF00737e8iwhH1 A: extended segmentsX: Photosystem II 10 kDa phosphoprotein PsbH (From Topology)H: Photosystem II 10 kDa phosphoprotein PsbH (From Topology)T: Photosystem II 10 kDa phosphoprotein PsbHF: PF00737ECOD (1.6)
N [auth h]PF00737e8iwhh1 A: extended segmentsX: Photosystem II 10 kDa phosphoprotein PsbH (From Topology)H: Photosystem II 10 kDa phosphoprotein PsbH (From Topology)T: Photosystem II 10 kDa phosphoprotein PsbHF: PF00737ECOD (1.6)
O [auth I]PF02532e8iwhI1 A: extended segmentsX: Photosystem II reaction center protein I, PsbI (From Topology)H: Photosystem II reaction center protein I, PsbI (From Topology)T: Photosystem II reaction center protein I, PsbIF: PF02532ECOD (1.6)
P [auth i]PF02532e8iwhi1 A: extended segmentsX: Photosystem II reaction center protein I, PsbI (From Topology)H: Photosystem II reaction center protein I, PsbI (From Topology)T: Photosystem II reaction center protein I, PsbIF: PF02532ECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
TA [auth a]
Photosystem II protein D1
Q [auth J],
R [auth j]
Photosystem II reaction center protein J-
S [auth K],
T [auth k]
Photosystem II reaction center protein K-
U [auth L],
V [auth l]
Photosystem II reaction center protein L-
W [auth M],
X [auth m]
Photosystem II reaction center M protein, plastid-
Y [auth n],
Z [auth N]
Photosystem II subunit, PsbN.---
AA [auth O],
BA [auth o]
Oxygen-evolving enhancer protein 1-
CA [auth T],
DA [auth t]
Photosystem II reaction center protein T-
EA [auth U],
FA [auth u]
PS II complex 12 kDa extrinsic protein-
GA [auth V],
HA [auth v]
Cytochrome c-550
IA [auth W],
JA [auth w]
Photosystem II subunit, PsbW- -
B,
UA [auth b]
Photosystem II CP47 reaction center protein
KA [auth X],
LA [auth x]
Photosystem II reaction center X protein-
MA [auth Z],
NA [auth z]
Photosystem II reaction center protein Z-
OA [auth 3]Fucoxanthin chl a/c protein, lhca clade
PA [auth 4]Fucoxanthin-chlorophyll a-c binding protein, plastid
QA [auth 5]Fucoxanthin chlorophyll a/c protein 6
RA [auth 6]Fucoxanthin chlorophyll a/c protein 5
SA [auth 7],
ZA [auth 0]
Fucoxanthin chlorophyll a/c protein-LI818 clade
VA [auth Y],
WA [auth y]
Photosystem II reaction center protein Ycf12-
XA [auth Q],
YA [auth q]
Photosystem II subunit, PsbQ.- -
AB [auth 9],
BB [auth 2],
CB [auth 8],
DB [auth 1]
Fucoxanthin chlorophyll a/c light-harvesting protein, major type
C,
D [auth c]
Photosystem II CP43 reaction center protein
E [auth D],
F [auth d]
Photosystem II D2 protein
G [auth E],
H [auth e]
Cytochrome b559 subunit alpha
I [auth F],
J [auth f]
Cytochrome b559 subunit beta
K [auth G],
L [auth g]
Photosystem II Psb31 protein domain-containing protein- - -
M [auth H],
N [auth h]
Photosystem II reaction center protein H
O [auth I],
P [auth i]
Photosystem II reaction center protein I-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A,
TA [auth a]
IPR005867Photosystem II protein D1Family
A,
TA [auth a]
IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
A,
TA [auth a]
IPR000484Photosynthetic reaction centre, L/MFamily
Q [auth J],
R [auth j]
IPR002682Photosystem II PsbJFamily
Q [auth J],
R [auth j]
IPR037267Photosystem II PsbJ superfamilyHomologous Superfamily
S [auth K],
T [auth k]
IPR037270Photosystem II PsbK superfamilyHomologous Superfamily
S [auth K],
T [auth k]
IPR003687Photosystem II PsbKFamily
U [auth L],
V [auth l]
IPR003372Photosystem II PsbLFamily
U [auth L],
V [auth l]
IPR037266Photosystem II PsbL superfamilyHomologous Superfamily
W [auth M],
X [auth m]
IPR007826Photosystem II PsbMFamily
W [auth M],
X [auth m]
IPR037269Photosystem II PsbM superfamilyHomologous Superfamily
AA [auth O],
BA [auth o]
IPR011250Outer membrane protein/outer membrane enzyme PagP, beta-barrelHomologous Superfamily
AA [auth O],
BA [auth o]
IPR002628Photosystem II extrinsic protein OFamily
CA [auth T],
DA [auth t]
IPR001743Photosystem II PsbTFamily
CA [auth T],
DA [auth t]
IPR037268Photosystem II PsbT superfamilyHomologous Superfamily
EA [auth U],
FA [auth u]
IPR010527Photosystem II PsbU, oxygen evolving complexFamily
GA [auth V],
HA [auth v]
IPR017851Photosystem II extrinsic protein V, cytochrome c-550 precursorFamily
GA [auth V],
HA [auth v]
IPR016003Photosystem II extrinsic protein V, cytochrome c-550 precursor-likeFamily
GA [auth V],
HA [auth v]
IPR036909Cytochrome c-like domain superfamilyHomologous Superfamily
GA [auth V],
HA [auth v]
IPR009056Cytochrome c-like domainDomain
GA [auth V],
HA [auth v]
IPR029490Cytochrome c-550 domainDomain
B,
UA [auth b]
IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
B,
UA [auth b]
IPR000932Photosystem antenna protein-likeFamily
B,
UA [auth b]
IPR017486Photosystem II CP47 reaction centre proteinFamily
KA [auth X],
LA [auth x]
IPR009518Photosystem II PsbXFamily
KA [auth X],
LA [auth x]
IPR023431Photosystem II PsbX, type 1 subfamilyFamily
MA [auth Z],
NA [auth z]
IPR036512Photosystem II PsbZ superfamilyHomologous Superfamily
MA [auth Z],
NA [auth z]
IPR002644Photosystem II PsbZ, reaction centreFamily
OA [auth 3]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
OA [auth 3]IPR022796Chlorophyll A-B binding proteinFamily
PA [auth 4]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
PA [auth 4]IPR022796Chlorophyll A-B binding proteinFamily
QA [auth 5]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
QA [auth 5]IPR022796Chlorophyll A-B binding proteinFamily
RA [auth 6]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
RA [auth 6]IPR022796Chlorophyll A-B binding proteinFamily
SA [auth 7],
ZA [auth 0]
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
SA [auth 7],
ZA [auth 0]
IPR022796Chlorophyll A-B binding proteinFamily
VA [auth Y],
WA [auth y]
IPR010284Photosystem II reaction center protein Ycf12Family
XA [auth Q],
YA [auth q]
IPR023222PsbQ-like domain superfamilyHomologous Superfamily
AB [auth 9],
BB [auth 2],
CB [auth 8],
DB [auth 1]
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
AB [auth 9],
BB [auth 2],
CB [auth 8],
DB [auth 1]
IPR022796Chlorophyll A-B binding proteinFamily
C,
D [auth c]
IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
C,
D [auth c]
IPR000932Photosystem antenna protein-likeFamily
C,
D [auth c]
IPR005869Photosystem II CP43 reaction centre proteinFamily
C,
D [auth c]
IPR044900Photosystem II CP43 reaction centre protein superfamilyHomologous Superfamily
E [auth D],
F [auth d]
IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
E [auth D],
F [auth d]
IPR000484Photosynthetic reaction centre, L/MFamily
E [auth D],
F [auth d]
IPR005868Photosystem II D2 proteinFamily
G [auth E],
H [auth e]
IPR013081Photosystem II cytochrome b559, N-terminalDomain
G [auth E],
H [auth e]
IPR006217Photosystem II cytochrome b559, alpha subunitFamily
G [auth E],
H [auth e]
IPR013082Photosystem II cytochrome b559, alpha subunit, lumenal regionDomain
G [auth E],
H [auth e]
IPR037025Photosystem II cytochrome b559, alpha subunit superfamilyHomologous Superfamily
G [auth E],
H [auth e]
IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
I [auth F],
J [auth f]
IPR006241Photosystem II cytochrome b559, beta subunitFamily
I [auth F],
J [auth f]
IPR013081Photosystem II cytochrome b559, N-terminalDomain
I [auth F],
J [auth f]
IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
K [auth G],
L [auth g]
IPR040933Photosystem II Psb31 proteinDomain
M [auth H],
N [auth h]
IPR036863Photosystem II reaction centre protein H superfamilyHomologous Superfamily
M [auth H],
N [auth h]
IPR001056Photosystem II reaction centre protein HFamily
O [auth I],
P [auth i]
IPR037271Photosystem II PsbI superfamilyHomologous Superfamily
O [auth I],
P [auth i]
IPR003686Photosystem II PsbIFamily