8IR1

human nuclear pre-60S ribosomal particle - State A


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
K [auth I]SCOP2B SuperfamilyRibosomal protein L68033688 3000724 SCOP2B (2022-06-29)
L [auth K]SCOP2B SuperfamilyRibosomal protein L36e8053120 3002161 SCOP2B (2022-06-29)
O [auth P]SCOP2B SuperfamilyRibosomal protein L39e8095603 3001756 SCOP2B (2022-06-29)
P [auth Q]SCOP2B SuperfamilyRibosomal protein L13e-like8053155 3002162 SCOP2B (2022-06-29)
R [auth U]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8098812 3000210 SCOP2B (2022-06-29)
T [auth X]SCOP2B SuperfamilyZn-binding ribosomal proteins8101551 3001320 SCOP2B (2022-06-29)
U [auth Z]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8095977 3001045 SCOP2B (2022-06-29)
Y [auth e]SCOP2B Superfamily50S Ribosomal protein L14-like8072050 3000433 SCOP2B (2022-06-29)
Z [auth h]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8076756 3000334 SCOP2B (2022-06-29)
AA [auth i]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8053050 3000334 SCOP2B (2022-06-29)
C [auth 6]SCOP2B SuperfamilyPentein8098764 3000640 SCOP2B (2022-06-29)
DA [auth n]SCOP2B SuperfamilyTranslational proteins8087455 3000811 SCOP2B (2022-06-29)
EA [auth o]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8053100 3000334 SCOP2B (2022-06-29)
EA [auth o]SCOP2B SuperfamilyRibosomal protein L6e N-terminal domain8053099 3002160 SCOP2B (2022-06-29)
FA [auth p]SCOP2B SuperfamilyRibosomal protein L30p/L7e8052923 3001378 SCOP2B (2022-06-29)
FA [auth p]SCOP2B SuperfamilyRibosomal L30p/L7e protein N-terminal domain-lke8052922 3002152 SCOP2B (2022-06-29)
HA [auth A]SCOP2B SuperfamilyRL5-like8073892 3001709 SCOP2B (2022-06-29)
IA [auth C]SCOP2B SuperfamilyTranslational machinery components8052887 3000571 SCOP2B (2022-06-29)
SA [auth g]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8095967 3000210 SCOP2B (2022-06-29)
TA [auth d]SCOP2B Superfamily60S Ribosomal protein L22e8053060 3002158 SCOP2B (2022-06-29)
WA [auth Y]SCOP2B SuperfamilyRibosomal protein L228076704 3001078 SCOP2B (2022-06-29)
E [auth B]SCOP2B SuperfamilyTranslational proteins8078351 3000811 SCOP2B (2022-06-29)
XA [auth O]SCOP2B SuperfamilyRibosomal L38e protein-like8053567 3002206 SCOP2B (2022-06-29)
F [auth D]SCOP2B Superfamily60S ribosomal protein L4 C-terminal domain-like8052831 3002143 SCOP2B (2022-06-29)
F [auth D]SCOP2B SuperfamilyRibosomal protein L48052832 3001146 SCOP2B (2022-06-29)
G [auth E]SCOP2B SuperfamilyL30e-like8077491 3001739 SCOP2B (2022-06-29)
H [auth F]SCOP2B SuperfamilyRibosomal protein L34e-like8053540 3002203 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth y]PF00298e8ir1y1 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: PF00298ECOD (1.6)
A [auth y]PF03946e8ir1y2 A: a+b two layersX: Ribosomal protein L11/L12e N-terminal domain-likeH: Ribosomal protein L11/L12e N-terminal domain (From Topology)T: Ribosomal protein L11/L12e N-terminal domainF: PF03946ECOD (1.6)
J [auth H]PF00831e8ir1H1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: PF00831ECOD (1.6)
K [auth I]PF00347e8ir1I2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: PF00347ECOD (1.6)
L [auth K]PF01158e8ir1K1 A: alpha arraysX: 60S ribosomal protein rpL36 (L36e) (From Topology)H: 60S ribosomal protein rpL36 (L36e) (From Topology)T: 60S ribosomal protein rpL36 (L36e)F: PF01158ECOD (1.6)
M [auth L]PF00828e8ir1L1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF00828ECOD (1.6)
N [auth M]PF01907e8ir1M1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01907ECOD (1.6)
O [auth P]PF00832e8ir1P1 A: extended segmentsX: Ribosomal protein L39e (From Topology)H: Ribosomal protein L39e (From Topology)T: Ribosomal protein L39eF: PF00832ECOD (1.6)
P [auth Q]PF01294e8ir1Q1 A: extended segmentsX: RPL13 (From Topology)H: RPL13 (From Topology)T: RPL13F: PF01294ECOD (1.6)
Q [auth S]PF00467,PF01929e8ir1S1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF01929ECOD (1.6)
R [auth U]PF00827e8ir1U1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00827ECOD (1.6)
S [auth V]PF00572e8ir1V1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: PF00572ECOD (1.6)
T [auth X]PF01780e8ir1X1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01780ECOD (1.6)
U [auth Z]PF17135e8ir1Z1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF17135ECOD (1.6)
V [auth a]PF01280e8ir1a2 A: alpha arraysX: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) N-terminal domainF: PF01280ECOD (1.6)
V [auth a]PF01280e8ir1a1 A: alpha bundlesX: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) C-terminal domainF: PF01280ECOD (1.6)
W [auth b]F_UNCLASSIFIEDe8ir1b1 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: F_UNCLASSIFIEDECOD (1.6)
W [auth b]PF01775e8ir1b2 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: PF01775ECOD (1.6)
X [auth c]PF01157e8ir1c1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01157ECOD (1.6)
Y [auth e]PF00238e8ir1e1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF00238ECOD (1.6)
Z [auth h]PF16906e8ir1h1 A: beta barrelsX: SH3H: SH3T: SH3F: PF16906ECOD (1.6)
AA [auth i]PF00467,PF01777e8ir1i1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF01777ECOD (1.6)
BA [auth l]PF01778e8ir1l1 A: a+b two layersX: RPL28 (From Topology)H: RPL28 (From Topology)T: RPL28F: PF01778ECOD (1.6)
CA [auth m]PF00181e8ir1m2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00181ECOD (1.6)
CA [auth m]PF03947e8ir1m1 A: beta barrelsX: SH3H: SH3T: SH3F: PF03947ECOD (1.6)
C [auth 6]PF01912e8ir161 A: a+b duplicates or obligate multimersX: Pentein (From Topology)H: Pentein (From Topology)T: PenteinF: PF01912ECOD (1.6)
DA [auth n]PF01247e8ir1n1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF01247ECOD (1.6)
EA [auth o]PF01159,PF03868e8ir1o1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01159,PF03868ECOD (1.6)
FA [auth p]PF00327,PF08079e8ir1p1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327,PF08079ECOD (1.6)
HA [auth A]PF00281,PF00673e8ir1A1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: PF00281,PF00673ECOD (1.6)
IA [auth C]PF14204,PF17144e8ir1C1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF14204,PF17144ECOD (1.6)
KA [auth N]PF00400e8ir1N1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 8-bladedF: PF00400ECOD (1.6)
KA [auth N]PF08154e8ir1N2 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: PF08154ECOD (1.6)
NA [auth v]PF00466e8ir1v2 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein L10-like (From Topology)T: Ribosomal protein L10-likeF: PF00466ECOD (1.6)
NA [auth v]PF17777e8ir1v1 A: a+b two layersX: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology)H: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology)T: Insertion domain in 60S ribosomal protein rpP0 (L10P)F: PF17777ECOD (1.6)
SA [auth g]PF00276,PF03939e8ir1g1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00276,PF03939ECOD (1.6)
TA [auth d]PF01776e8ir1d1 A: a+b two layersX: Ribosomal protein L22e (From Topology)H: Ribosomal protein L22e (From Topology)T: Ribosomal protein L22eF: PF01776ECOD (1.6)
UA [auth j]PF01198e8ir1j1 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: PF01198ECOD (1.6)
VA [auth k]PF01655e8ir1k1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L32e (From Topology)T: Ribosomal protein L32eF: PF01655ECOD (1.6)
WA [auth Y]PF00237e8ir1Y1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: PF00237ECOD (1.6)
E [auth B]PF00297e8ir1B1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00297ECOD (1.6)
XA [auth O]PF01781e8ir1O1 A: a+b two layersX: SRP9/14-likeH: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology)T: Signal recognition particle alu RNA binding heterodimer SRP9/14-relatedF: PF01781ECOD (1.6)
F [auth D]PF00573e8ir1D2 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: PF00573ECOD (1.6)
F [auth D]PF14374e8ir1D1 A: extended segmentsX: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)T: C-terminal helical region in 60S ribosomal protein L4 (L4p)F: PF14374ECOD (1.6)
G [auth E]PF01248e8ir1E1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
H [auth F]PF01199e8ir1F1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: RPL34 (From Topology)T: RPL34F: PF01199ECOD (1.6)
I [auth G]PF01248e8ir1G1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth y]PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.Domain
A [auth y]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domain- Domain
J [auth H]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
K [auth I]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
L [auth K]PF01158Ribosomal protein L36e (Ribosomal_L36e)Ribosomal protein L36e- Family
M [auth L]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
N [auth M]PF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
O [auth P]PF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
P [auth Q]PF01294Ribosomal protein L13e (Ribosomal_L13e)Ribosomal protein L13e- Family
Q [auth S]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
R [auth U]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
S [auth V]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
B [auth 4]PF08155NOGCT (NUC087) domain (NOGCT)NOGCT (NUC087) domainThis C terminal domain is found in the NOG subfamily of nucleolar GTP-binding proteins [1].Domain
B [auth 4]PF06858Nucleolar GTP-binding protein 1 (NOG1) (NOG1)Nucleolar GTP-binding protein 1 (NOG1)- Family
B [auth 4]PF17835NOG1 N-terminal helical domain (NOG1_N)NOG1 N-terminal helical domainThis domain is found at the N-terminus of NOG1 GTPase proteins.Domain
T [auth X]PF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family
U [auth Z]PF17135Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18)Ribosomal protein 60S L18 and 50S L18e- Family
V [auth a]PF01280Ribosomal protein L19e (Ribosomal_L19e)Ribosomal protein L19e- Family
W [auth b]PF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A.Domain
X [auth c]PF01157Ribosomal protein L21e (Ribosomal_L21e)Ribosomal protein L21e- Family
Y [auth e]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
Z [auth h]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
Z [auth h]PF00467KOW motif (KOW)KOW motif- Family
AA [auth i]PF01777Ribosomal L27e protein family (Ribosomal_L27e)Ribosomal L27e protein family- Family
AA [auth i]PF00467KOW motif (KOW)KOW motif- Family
BA [auth l]PF01778Ribosomal L28e protein family (Ribosomal_L28e)Ribosomal L28e protein family- Family
CA [auth m]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
CA [auth m]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
C [auth 6]PF01912eIF-6 family (eIF-6)eIF-6 family- Family
DA [auth n]PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35Ae- Domain
EA [auth o]PF03868Ribosomal protein L6, N-terminal domain (Ribosomal_L6e_N)Ribosomal protein L6, N-terminal domain- Domain
EA [auth o]PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
FA [auth p]PF08079Ribosomal L30 N-terminal domain (Ribosomal_L30_N)Ribosomal L30 N-terminal domainThis presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1].Domain
FA [auth p]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
GA [auth z]PF10169Learning-associated protein (Laps)Learning-associated protein- Family
HA [auth A]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
HA [auth A]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
IA [auth C]PF17144Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)Ribosomal large subunit proteins 60S L5, and 50S L18- Family
IA [auth C]PF14204Ribosomal L18 C-terminal region (Ribosomal_L18_c)Ribosomal L18 C-terminal regionThis domain is the C-terminal end of ribosomal L18/L5 proteins.Domain
JA [auth J]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
KA [auth N]PF08154NLE (NUC135) domain (NLE)NLE (NUC135) domainThis domain is located N terminal to WD40 repeats. It is found in the microtubule-associated protein Swiss:Q12024 [1].Domain
KA [auth N]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
LA [auth R]PF04939Ribosome biogenesis regulatory protein (RRS1) (RRS1)Ribosome biogenesis regulatory protein (RRS1)- Family
MA [auth u]PF08701GNL3L/Grn1 putative GTPase (GN3L_Grn1)GNL3L/Grn1 putative GTPase- Family
D [auth 7]PF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24e- Domain
NA [auth v]PF17777Insertion domain in 60S ribosomal protein L10P (RL10P_insert)Insertion domain in 60S ribosomal protein L10PThis domain is found in prokaryotic and archaeal ribosomal L10 protein [1].Domain
NA [auth v]PF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family
OA [auth w]PF08153NGP1NT (NUC091) domain (NGP1NT)NGP1NT (NUC091) domainThis N terminal domain is found in a subfamily of hypothetical nucleolar GTP-binding proteins similar to human NGP1 [1].Domain
OA [auth w]PF0192650S ribosome-binding GTPase (MMR_HSR1)50S ribosome-binding GTPase- Family
PA [auth r]PF03879Cgr1 family (Cgr1)Cgr1 family- Coiled-coil
SA [auth g]PF03939Ribosomal protein L23, N-terminal domain (Ribosomal_L23eN)Ribosomal protein L23, N-terminal domain- Family
SA [auth g]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
TA [auth d]PF01776Ribosomal L22e protein family (Ribosomal_L22e)Ribosomal L22e protein family- Family
UA [auth j]PF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
VA [auth k]PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
WA [auth Y]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
E [auth B]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
XA [auth O]PF01781Ribosomal L38e protein family (Ribosomal_L38e)Ribosomal L38e protein family- Family
ZA [auth T]PF04427Brix domain (Brix)Brix domain- Domain
AB [auth 9]PF11861Ribosomal RNA methyltransferase Spb1, DUF3381 (DUF3381)Ribosomal RNA methyltransferase Spb1, DUF3381This domain is functionally uncharacterised and it is found in the central region of fungal SPB1 and mammalian homologue FTSJ3. This domain is found associated with Pfam:PF07780, Pfam:PF01728. SPB1 is an adoMet-dependent rRNA methyltransferase requi ...This domain is functionally uncharacterised and it is found in the central region of fungal SPB1 and mammalian homologue FTSJ3. This domain is found associated with Pfam:PF07780, Pfam:PF01728. SPB1 is an adoMet-dependent rRNA methyltransferase required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit [1]. FTSJ3, SPB1 homologue in humans, is associated with NIP7 (involved in the biogenesis of 40S subunit) and functions in pre-rRNA processing [2].
Domain
F [auth D]PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins.Domain
F [auth D]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
G [auth E]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
H [auth F]PF01199Ribosomal protein L34e (Ribosomal_L34e)Ribosomal protein L34e- Family
I [auth G]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth y]60S ribosomal protein L12
J [auth H]60S ribosomal protein L35
K [auth I]60S ribosomal protein L9
L [auth K]60S ribosomal protein L36
M [auth L]60S ribosomal protein L27a
N [auth M]60S ribosomal protein L37
O [auth P]60S ribosomal protein L39
P [auth Q]60S ribosomal protein L13
Q [auth S]60S ribosomal protein L14
R [auth U]60S ribosomal protein L15
S [auth V]60S ribosomal protein L13a
B [auth 4]GTP-binding protein 4
T [auth X]60S ribosomal protein L37a
U [auth Z]60S ribosomal protein L18
V [auth a]60S ribosomal protein L19
W [auth b]60S ribosomal protein L18a
X [auth c]60S ribosomal protein L21
Y [auth e]60S ribosomal protein L23
Z [auth h]60S ribosomal protein L26
AA [auth i]60S ribosomal protein L27
BA [auth l]60S ribosomal protein L28
CA [auth m]60S ribosomal protein L8
C [auth 6]Eukaryotic translation initiation factor 6
DA [auth n]60S ribosomal protein L35a
EA [auth o]60S ribosomal protein L6
FA [auth p]60S ribosomal protein L7
GA [auth z]Protein LLP homolog
HA [auth A]60S ribosomal protein L11
IA [auth C]60S ribosomal protein L5
JA [auth J]Ribosome biogenesis protein NSA2 homolog
KA [auth N]Notchless protein homolog 1-
LA [auth R]Ribosome biogenesis regulatory protein homolog
MA [auth u]Guanine nucleotide-binding protein-like 3
D [auth 7]Probable ribosome biogenesis protein RLP24
NA [auth v]mRNA turnover protein 4 homolog
OA [auth w]G Protein Nucleolar 2
PA [auth r]Coiled-coil domain-containing protein 86 -
QA [auth 2]28S rRNA---
RA [auth 8]5.8S rRMA---
SA [auth g]60S ribosomal protein L23a
TA [auth d]60S ribosomal protein L22
UA [auth j]60S ribosomal protein L31
VA [auth k]60S ribosomal protein L32
WA [auth Y]60S ribosomal protein L17
E [auth B]60S ribosomal protein L3
XA [auth O]60S ribosomal protein L38
YA [auth W]5S RNA---
ZA [auth T]Ribosome production factor 2 homolog
AB [auth 9]pre-rRNA 2'-O-ribose RNA methyltransferase FTSJ3
F [auth D]60S ribosomal protein L4
G [auth E]60S ribosomal protein L30
H [auth F]60S ribosomal protein L34
I [auth G]60S ribosomal protein L7a

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth y]IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
A [auth y]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
A [auth y]IPR000911Ribosomal protein uL11Family
A [auth y]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
A [auth y]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
A [auth y]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
J [auth H]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
J [auth H]IPR045059Large ribosomal subunit protein uL29, eukaryotesFamily
J [auth H]IPR001854Large ribosomal subunit protein uL29Family
J [auth H]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
K [auth I]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
K [auth I]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
K [auth I]IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
K [auth I]IPR000702Large ribosomal subunit protein uL6-likeFamily
L [auth K]IPR000509Large ribosomal subunit protein eL36Family
L [auth K]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
M [auth L]IPR027386Ribosomal uL15, N-terminalHomologous Superfamily
M [auth L]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
M [auth L]IPR021131Large ribosomal subunit protein uL15/eL18Domain
M [auth L]IPR030878Large ribosomal subunit protein uL15Family
M [auth L]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
N [auth M]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
N [auth M]IPR001569Large ribosomal subunit protein eL37Family
N [auth M]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
N [auth M]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
O [auth P]IPR000077Large ribosomal subunit protein eL39Family
O [auth P]IPR020083Large ribosomal subunit protein eL39, conserved siteConserved Site
O [auth P]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
P [auth Q]IPR001380Large ribosomal subunit protein eL13Family
P [auth Q]IPR018256Large ribosomal subunit protein eL13, conserved siteConserved Site
Q [auth S]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
Q [auth S]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
Q [auth S]IPR039660Large ribosomal subunit protein eL14Family
Q [auth S]IPR041985Large ribosomal subunit protein eL14, KOW motifDomain
Q [auth S]IPR002784Large ribosomal subunit protein eL14 domainDomain
R [auth U]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
R [auth U]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
R [auth U]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
R [auth U]IPR000439Large ribosomal subunit protein eL15Family
S [auth V]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
S [auth V]IPR005755Large ribosomal subunit protein uL13, eukaryotic/archaealFamily
S [auth V]IPR005822Large ribosomal subunit protein uL13Family
S [auth V]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
B [auth 4]IPR024926Nucleolar GTP-binding protein 1Family
B [auth 4]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
B [auth 4]IPR031167OBG-type guanine nucleotide-binding (G) domainDomain
B [auth 4]IPR012973NOG, C-terminalDomain
B [auth 4]IPR010674Nucleolar GTP-binding protein 1, Rossman-fold domainDomain
B [auth 4]IPR041623NOG1, N-terminal helical domainDomain
B [auth 4]IPR005225Small GTP-binding protein domainDomain
B [auth 4]IPR006073GTP binding domainDomain
T [auth X]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
T [auth X]IPR002674Large ribosomal subunit protein eL43Family
T [auth X]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
U [auth Z]IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
U [auth Z]IPR000039Large ribosomal subunit protein eL18Family
U [auth Z]IPR021131Large ribosomal subunit protein uL15/eL18Domain
U [auth Z]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
V [auth a]IPR039547Large ribosomal subunit protein eL19Family
V [auth a]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
V [auth a]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
V [auth a]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
V [auth a]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
V [auth a]IPR000196Large ribosomal subunit protein eL19 domainDomain
W [auth b]IPR028877Large ribosomal subunit protein eL20Family
W [auth b]IPR023573Large ribosomal subunit protein eL20 domainDomain
W [auth b]IPR021138Large ribosomal subunit protein eL20, eukaryotesFamily
X [auth c]IPR001147Large ribosomal subunit protein eL21Family
X [auth c]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
X [auth c]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
X [auth c]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
Y [auth e]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
Y [auth e]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
Y [auth e]IPR000218Large ribosomal subunit protein uL14Family
Z [auth h]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
Z [auth h]IPR005756Large ribosomal subunit protein uL24, eukaryotic/archaealFamily
Z [auth h]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
Z [auth h]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
Z [auth h]IPR005824KOWDomain
Z [auth h]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
AA [auth i]IPR001141Large ribosomal subunit protein eL27Family
AA [auth i]IPR018262Large ribosomal subunit protein eL27, conserved siteConserved Site
AA [auth i]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
AA [auth i]IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
AA [auth i]IPR005824KOWDomain
AA [auth i]IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
BA [auth l]IPR029004Ribosomal eL28/Mak16Domain
BA [auth l]IPR002672Large ribosomal subunit protein eL28Family
CA [auth m]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
CA [auth m]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
CA [auth m]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
CA [auth m]IPR023672Large ribosomal subunit protein uL2, archaeal-typeFamily
CA [auth m]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
CA [auth m]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
CA [auth m]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
CA [auth m]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
CA [auth m]IPR002171Large ribosomal subunit protein uL2Family
C [auth 6]IPR002769Translation initiation factor IF6Family
DA [auth n]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
DA [auth n]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
DA [auth n]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
DA [auth n]IPR001780Large ribosomal subunit protein eL33Family
EA [auth o]IPR005568Large ribosomal subunit protein uL6, N-terminalDomain
EA [auth o]IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
EA [auth o]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
EA [auth o]IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
EA [auth o]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
EA [auth o]IPR000915Large ribosomal subunit protein eL6Family
FA [auth p]IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
FA [auth p]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
FA [auth p]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
FA [auth p]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
FA [auth p]IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotesDomain
FA [auth p]IPR039699Large ribosomal subunit protein uL30Family
FA [auth p]IPR005998Large ribosomal subunit protein uL30, eukaryoticFamily
GA [auth z]IPR018784Learning associated protein 18-likeFamily
HA [auth A]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
HA [auth A]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
HA [auth A]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
HA [auth A]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
HA [auth A]IPR002132Large ribosomal subunit protein uL5Family
IA [auth C]IPR005485Large ribosomal subunit protein uL18 eukaryotic/archaealFamily
IA [auth C]IPR025607Large ribosomal subunit protein uL18, C-terminal, eukaryotesDomain
JA [auth J]IPR039411Ribosomal biogenesis NSA2 familyFamily
JA [auth J]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
KA [auth N]IPR019775WD40 repeat, conserved siteConserved Site
KA [auth N]IPR012972NLEDomain
KA [auth N]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
KA [auth N]IPR001632G-protein, beta subunitDomain
KA [auth N]IPR001680WD40 repeatRepeat
KA [auth N]IPR020472G-protein beta WD-40 repeatRepeat
KA [auth N]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
LA [auth R]IPR007023Ribosomal biogenesis regulatory proteinFamily
MA [auth u]IPR030378Circularly permuted (CP)-type guanine nucleotide-binding (G) domainDomain
MA [auth u]IPR006073GTP binding domainDomain
MA [auth u]IPR014813Guanine nucleotide-binding protein-like 3, N-terminal domainDomain
MA [auth u]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
D [auth 7]IPR023438Large ribosomal subunit protein eL24Family
D [auth 7]IPR011017TRASH domainDomain
D [auth 7]IPR000988Large ribosomal subunit protein eL24-relatedFamily
D [auth 7]IPR023442Large ribosomal subunit protein eL24, conserved siteConserved Site
D [auth 7]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
NA [auth v]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
NA [auth v]IPR001790Large ribosomal subunit protein uL10Family
NA [auth v]IPR043164Large ribosomal subunit protein uL10-like, insertion domain superfamilyHomologous Superfamily
NA [auth v]IPR040637Large ribosomal subunit protein uL10-like, insertion domainDomain
NA [auth v]IPR033867Ribosome assembly factor Mrt4Family
OA [auth w]IPR030378Circularly permuted (CP)-type guanine nucleotide-binding (G) domainDomain
OA [auth w]IPR024929Nucleolar GTP-binding protein 2, circularly permuted GTPase motifDomain
OA [auth w]IPR006073GTP binding domainDomain
OA [auth w]IPR012971Nucleolar GTP-binding protein 2, N-terminal domainDomain
OA [auth w]IPR023179GTP-binding protein, orthogonal bundle domain superfamilyHomologous Superfamily
OA [auth w]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
PA [auth r]IPR026570Coiled-coil domain-containing protein 86Family
PA [auth r]IPR005579Cgr1-likeFamily
SA [auth g]IPR019985Large ribosomal subunit protein uL23Family
SA [auth g]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
SA [auth g]IPR013025Large ribosomal subunit protein uL23-likeFamily
SA [auth g]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
SA [auth g]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
SA [auth g]IPR005633Large ribosomal subunit protein uL23, N-terminalDomain
TA [auth d]IPR038526Large ribosomal subunit protein eL22 superfamilyHomologous Superfamily
TA [auth d]IPR002671Large ribosomal subunit protein eL22Family
UA [auth j]IPR000054Large ribosomal subunit protein eL31Family
UA [auth j]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
UA [auth j]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
VA [auth k]IPR001515Large ribosomal subunit protein eL32Family
VA [auth k]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
VA [auth k]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
WA [auth Y]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
WA [auth Y]IPR001063Large ribosomal subunit protein uL22Family
WA [auth Y]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
WA [auth Y]IPR005721Large ribosomal subunit protein uL22, eukaryotic/archaealFamily
E [auth B]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
E [auth B]IPR045077Large ribosomal subunit protein uL3, archaeal/eukaryotic-typeFamily
E [auth B]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
E [auth B]IPR000597Large ribosomal subunit protein uL3Family
E [auth B]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
XA [auth O]IPR002675Large ribosomal subunit protein eL38Family
XA [auth O]IPR038464Large ribosomal subunit protein eL38 superfamilyHomologous Superfamily
ZA [auth T]IPR039770Ribosome biogenesis protein Rpf2Family
ZA [auth T]IPR007109Brix domainDomain
AB [auth 9]IPR024576Ribosomal RNA methyltransferase Spb1, domain of unknown function DUF3381Domain
AB [auth 9]IPR012920Ribosomal RNA methyltransferase, SPB1-like, C-terminalDomain
AB [auth 9]IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
AB [auth 9]IPR002877Ribosomal RNA methyltransferase, FtsJ domainDomain
AB [auth 9]IPR015507Ribosomal RNA large subunit methyltransferase EFamily
AB [auth 9]IPR028589AdoMet-dependent rRNA methyltransferase SPB1-likeFamily
F [auth D]IPR045240Large ribosomal subunit protein uL4, eukaryotic and archaeal typeFamily
F [auth D]IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
F [auth D]IPR002136Large ribosomal subunit protein uL4Family
F [auth D]IPR013000Large ribosomal subunit protein uL4, eukaryotic/archaeal, conserved siteConserved Site
F [auth D]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
G [auth E]IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
G [auth E]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
G [auth E]IPR000231Large ribosomal subunit protein eL30Family
G [auth E]IPR039109Large ribosomal subunit protein eL30-likeFamily
G [auth E]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
H [auth F]IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site
H [auth F]IPR008195Large ribosomal subunit protein eL34Family
I [auth G]IPR001921Large ribosomal subunit protein eL8Family
I [auth G]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
I [auth G]IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
I [auth G]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
I [auth G]IPR018492Ribosomal protein eL8/Nhp2 familyFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A [auth y]PharosP30050
J [auth H]PharosP42766
K [auth I]PharosP32969
L [auth K]PharosQ9Y3U8
M [auth L]PharosP46776
N [auth M]PharosP61927
P [auth Q]PharosP26373
Q [auth S]PharosP50914
R [auth U]PharosP61313
S [auth V]PharosP40429
B [auth 4]PharosQ9BZE4
T [auth X]PharosP61513
U [auth Z]PharosQ07020
V [auth a]PharosP84098
X [auth c]PharosP46778
Y [auth e]PharosP62829
Z [auth h]PharosP61254
AA [auth i]PharosP61353
BA [auth l]PharosP46779
C [auth 6]PharosP56537
DA [auth n]PharosP18077
EA [auth o]PharosQ02878
FA [auth p]PharosP18124
GA [auth z]PharosQ9BRT6
HA [auth A]PharosP62913
IA [auth C]PharosP46777
JA [auth J]PharosO95478
KA [auth N]PharosQ9NVX2
LA [auth R]PharosQ15050
MA [auth u]PharosQ9BVP2
D [auth 7]PharosQ9UHA3
NA [auth v]PharosQ9UKD2
OA [auth w]PharosQ13823
PA [auth r]PharosQ9H6F5
SA [auth g]PharosP62750
TA [auth d]PharosP35268
UA [auth j]PharosP62899
VA [auth k]PharosP62910
WA [auth Y]PharosP18621
E [auth B]PharosP39023
XA [auth O]PharosP63173
ZA [auth T]PharosQ9H7B2
AB [auth 9]PharosQ8IY81
F [auth D]PharosP36578
G [auth E]PharosP62888
H [auth F]PharosP49207
I [auth G]PharosP62424