8IPD

human nuclear pre-60S ribosomal particle - State C


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth 6]SCOP2B SuperfamilyPentein8098764 3000640 SCOP2B (2022-06-29)
L [auth I]SCOP2B SuperfamilyRibosomal protein L68033688 3000724 SCOP2B (2022-06-29)
N [auth K]SCOP2B SuperfamilyRibosomal protein L36e8053120 3002161 SCOP2B (2022-06-29)
Q [auth O]SCOP2B SuperfamilyRibosomal L38e protein-like8053567 3002206 SCOP2B (2022-06-29)
R [auth P]SCOP2B SuperfamilyRibosomal protein L39e8095603 3001756 SCOP2B (2022-06-29)
S [auth Q]SCOP2B SuperfamilyRibosomal protein L13e-like8053155 3002162 SCOP2B (2022-06-29)
USCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8098812 3000210 SCOP2B (2022-06-29)
W [auth X]SCOP2B SuperfamilyZn-binding ribosomal proteins8101551 3001320 SCOP2B (2022-06-29)
X [auth Z]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8095977 3001045 SCOP2B (2022-06-29)
AA [auth e]SCOP2B Superfamily50S Ribosomal protein L14-like8072050 3000433 SCOP2B (2022-06-29)
BA [auth g]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8095967 3000210 SCOP2B (2022-06-29)
CA [auth h]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8076756 3000334 SCOP2B (2022-06-29)
DA [auth i]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8053050 3000334 SCOP2B (2022-06-29)
GA [auth n]SCOP2B SuperfamilyTranslational proteins8087455 3000811 SCOP2B (2022-06-29)
HA [auth o]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8053100 3000334 SCOP2B (2022-06-29)
HA [auth o]SCOP2B SuperfamilyRibosomal protein L6e N-terminal domain8053099 3002160 SCOP2B (2022-06-29)
IA [auth p]SCOP2B SuperfamilyRibosomal L30p/L7e protein N-terminal domain-lke8052922 3002152 SCOP2B (2022-06-29)
IA [auth p]SCOP2B SuperfamilyRibosomal protein L30p/L7e8052923 3001378 SCOP2B (2022-06-29)
OA [auth C]SCOP2B SuperfamilyRL5-like8073892 3001709 SCOP2B (2022-06-29)
PA [auth R]SCOP2B SuperfamilyTranslational machinery components8052887 3000571 SCOP2B (2022-06-29)
TA [auth Y]SCOP2B SuperfamilyRibosomal protein L228076704 3001078 SCOP2B (2022-06-29)
WA [auth d]SCOP2B Superfamily60S Ribosomal protein L22e8053060 3002158 SCOP2B (2022-06-29)
F [auth B]SCOP2B SuperfamilyTranslational proteins8078351 3000811 SCOP2B (2022-06-29)
G [auth D]SCOP2B SuperfamilyRibosomal protein L48052832 3001146 SCOP2B (2022-06-29)
G [auth D]SCOP2B Superfamily60S ribosomal protein L4 C-terminal domain-like8052831 3002143 SCOP2B (2022-06-29)
H [auth E]SCOP2B SuperfamilyL30e-like8077491 3001739 SCOP2B (2022-06-29)
I [auth F]SCOP2B SuperfamilyRibosomal protein L34e-like8053540 3002203 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth 6]PF01912e8ipd61 A: a+b duplicates or obligate multimersX: Pentein (From Topology)H: Pentein (From Topology)T: PenteinF: PF01912ECOD (1.6)
J [auth G]PF01248e8ipdG1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
K [auth H]PF00831e8ipdH1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: PF00831ECOD (1.6)
L [auth I]PF00347e8ipdI2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: PF00347ECOD (1.6)
N [auth K]PF01158e8ipdK1 A: alpha arraysX: 60S ribosomal protein rpL36 (L36e) (From Topology)H: 60S ribosomal protein rpL36 (L36e) (From Topology)T: 60S ribosomal protein rpL36 (L36e)F: PF01158ECOD (1.6)
O [auth L]PF00828e8ipdL1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF00828ECOD (1.6)
P [auth M]PF01907e8ipdM1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01907ECOD (1.6)
Q [auth O]PF01781e8ipdO1 A: a+b two layersX: SRP9/14-likeH: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology)T: Signal recognition particle alu RNA binding heterodimer SRP9/14-relatedF: PF01781ECOD (1.6)
R [auth P]PF00832e8ipdP1 A: extended segmentsX: Ribosomal protein L39e (From Topology)H: Ribosomal protein L39e (From Topology)T: Ribosomal protein L39eF: PF00832ECOD (1.6)
S [auth Q]PF01294e8ipdQ1 A: extended segmentsX: RPL13 (From Topology)H: RPL13 (From Topology)T: RPL13F: PF01294ECOD (1.6)
T [auth S]PF00467,PF01929e8ipdS1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF01929ECOD (1.6)
UPF00827e8ipdU1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00827ECOD (1.6)
VPF00572e8ipdV1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: PF00572ECOD (1.6)
W [auth X]PF01780e8ipdX1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01780ECOD (1.6)
X [auth Z]PF17135e8ipdZ1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF17135ECOD (1.6)
Y [auth a]PF01280e8ipda2 A: alpha arraysX: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) N-terminal domainF: PF01280ECOD (1.6)
Y [auth a]PF01280e8ipda1 A: alpha bundlesX: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) C-terminal domainF: PF01280ECOD (1.6)
Z [auth b]F_UNCLASSIFIEDe8ipdb2 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: F_UNCLASSIFIEDECOD (1.6)
Z [auth b]PF01775e8ipdb1 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: PF01775ECOD (1.6)
AA [auth e]PF00238e8ipde1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF00238ECOD (1.6)
BA [auth g]PF00276,PF03939e8ipdg1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00276,PF03939ECOD (1.6)
CA [auth h]PF16906e8ipdh1 A: beta barrelsX: SH3H: SH3T: SH3F: PF16906ECOD (1.6)
DA [auth i]PF00467,PF01777e8ipdi1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF01777ECOD (1.6)
EA [auth l]PF01778e8ipdl1 A: a+b two layersX: RPL28 (From Topology)H: RPL28 (From Topology)T: RPL28F: PF01778ECOD (1.6)
FA [auth m]PF00181e8ipdm2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00181ECOD (1.6)
FA [auth m]PF03947e8ipdm1 A: beta barrelsX: SH3H: SH3T: SH3F: PF03947ECOD (1.6)
GA [auth n]PF01247e8ipdn1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF01247ECOD (1.6)
HA [auth o]PF01159,PF03868e8ipdo1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01159,PF03868ECOD (1.6)
IA [auth p]PF00327,PF08079e8ipdp1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327,PF08079ECOD (1.6)
MA [auth y]PF00298e8ipdy1 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: PF00298ECOD (1.6)
MA [auth y]PF03946e8ipdy2 A: a+b two layersX: Ribosomal protein L11/L12e N-terminal domain-likeH: Ribosomal protein L11/L12e N-terminal domain (From Topology)T: Ribosomal protein L11/L12e N-terminal domainF: PF03946ECOD (1.6)
OA [auth C]PF00281,PF00673e8ipdC1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: PF00281,PF00673ECOD (1.6)
PA [auth R]PF14204,PF17144e8ipdR1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF14204,PF17144ECOD (1.6)
QA [auth W]PF00400e8ipdW1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 8-bladedF: PF00400ECOD (1.6)
RA [auth T]PF01157e8ipdT1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01157ECOD (1.6)
TA [auth Y]PF00237e8ipdY1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: PF00237ECOD (1.6)
UA [auth k]PF01655e8ipdk1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L32e (From Topology)T: Ribosomal protein L32eF: PF01655ECOD (1.6)
VA [auth j]PF01198e8ipdj1 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: PF01198ECOD (1.6)
WA [auth d]PF01776e8ipdd1 A: a+b two layersX: Ribosomal protein L22e (From Topology)H: Ribosomal protein L22e (From Topology)T: Ribosomal protein L22eF: PF01776ECOD (1.6)
YA [auth v]PF00466e8ipdv2 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein L10-like (From Topology)T: Ribosomal protein L10-likeF: PF00466ECOD (1.6)
YA [auth v]PF17777e8ipdv1 A: a+b two layersX: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology)H: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology)T: Insertion domain in 60S ribosomal protein rpP0 (L10P)F: PF17777ECOD (1.6)
F [auth B]PF00297e8ipdB1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00297ECOD (1.6)
G [auth D]PF00573e8ipdD1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: PF00573ECOD (1.6)
G [auth D]PF14374e8ipdD2 A: extended segmentsX: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)T: C-terminal helical region in 60S ribosomal protein L4 (L4p)F: PF14374ECOD (1.6)
H [auth E]PF01248e8ipdE1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
I [auth F]PF01199e8ipdF1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: RPL34 (From Topology)T: RPL34F: PF01199ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth 6]PF01912eIF-6 family (eIF-6)eIF-6 family- Family
J [auth G]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
K [auth H]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
L [auth I]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
M [auth J]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
N [auth K]PF01158Ribosomal protein L36e (Ribosomal_L36e)Ribosomal protein L36e- Family
O [auth L]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
P [auth M]PF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
Q [auth O]PF01781Ribosomal L38e protein family (Ribosomal_L38e)Ribosomal L38e protein family- Family
R [auth P]PF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
S [auth Q]PF01294Ribosomal protein L13e (Ribosomal_L13e)Ribosomal protein L13e- Family
B [auth 7]PF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24e- Domain
T [auth S]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
W [auth X]PF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family
X [auth Z]PF17135Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18)Ribosomal protein 60S L18 and 50S L18e- Family
Y [auth a]PF01280Ribosomal protein L19e (Ribosomal_L19e)Ribosomal protein L19e- Family
Z [auth b]PF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A.Domain
AA [auth e]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
BA [auth g]PF03939Ribosomal protein L23, N-terminal domain (Ribosomal_L23eN)Ribosomal protein L23, N-terminal domain- Family
BA [auth g]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
CA [auth h]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
CA [auth h]PF00467KOW motif (KOW)KOW motif- Family
DA [auth i]PF01777Ribosomal L27e protein family (Ribosomal_L27e)Ribosomal L27e protein family- Family
DA [auth i]PF00467KOW motif (KOW)KOW motif- Family
EA [auth l]PF01778Ribosomal L28e protein family (Ribosomal_L28e)Ribosomal L28e protein family- Family
FA [auth m]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
FA [auth m]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
GA [auth n]PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35Ae- Domain
HA [auth o]PF03868Ribosomal protein L6, N-terminal domain (Ribosomal_L6e_N)Ribosomal protein L6, N-terminal domain- Domain
HA [auth o]PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
IA [auth p]PF08079Ribosomal L30 N-terminal domain (Ribosomal_L30_N)Ribosomal L30 N-terminal domainThis presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1].Domain
IA [auth p]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
JA [auth r]PF03879Cgr1 family (Cgr1)Cgr1 family- Coiled-coil
KA [auth u]PF08701GNL3L/Grn1 putative GTPase (GN3L_Grn1)GNL3L/Grn1 putative GTPase- Family
LA [auth w]PF08153NGP1NT (NUC091) domain (NGP1NT)NGP1NT (NUC091) domainThis N terminal domain is found in a subfamily of hypothetical nucleolar GTP-binding proteins similar to human NGP1 [1].Domain
LA [auth w]PF0192650S ribosome-binding GTPase (MMR_HSR1)50S ribosome-binding GTPase- Family
MA [auth y]PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.Domain
MA [auth y]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domain- Domain
D [auth 9]PF12171Zinc-finger double-stranded RNA-binding (zf-C2H2_jaz)Zinc-finger double-stranded RNA-binding- Family
NA [auth z]PF10169Learning-associated protein (Laps)Learning-associated protein- Family
OA [auth C]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
OA [auth C]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
PA [auth R]PF17144Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)Ribosomal large subunit proteins 60S L5, and 50S L18- Family
PA [auth R]PF14204Ribosomal L18 C-terminal region (Ribosomal_L18_c)Ribosomal L18 C-terminal regionThis domain is the C-terminal end of ribosomal L18/L5 proteins.Domain
QA [auth W]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
RA [auth T]PF01157Ribosomal protein L21e (Ribosomal_L21e)Ribosomal protein L21e- Family
SA [auth 4]PF08155NOGCT (NUC087) domain (NOGCT)NOGCT (NUC087) domainThis C terminal domain is found in the NOG subfamily of nucleolar GTP-binding proteins [1].Domain
SA [auth 4]PF06858Nucleolar GTP-binding protein 1 (NOG1) (NOG1)Nucleolar GTP-binding protein 1 (NOG1)- Family
SA [auth 4]PF17835NOG1 N-terminal helical domain (NOG1_N)NOG1 N-terminal helical domainThis domain is found at the N-terminus of NOG1 GTPase proteins.Domain
TA [auth Y]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
UA [auth k]PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
VA [auth j]PF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
WA [auth d]PF01776Ribosomal L22e protein family (Ribosomal_L22e)Ribosomal L22e protein family- Family
YA [auth v]PF17777Insertion domain in 60S ribosomal protein L10P (RL10P_insert)Insertion domain in 60S ribosomal protein L10PThis domain is found in prokaryotic and archaeal ribosomal L10 protein [1].Domain
YA [auth v]PF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family
F [auth B]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
G [auth D]PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins.Domain
G [auth D]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
H [auth E]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
I [auth F]PF01199Ribosomal protein L34e (Ribosomal_L34e)Ribosomal protein L34e- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 6]Eukaryotic translation initiation factor 6
J [auth G]60S ribosomal protein L7a
K [auth H]60S ribosomal protein L35
L [auth I]60S ribosomal protein L9
M [auth J]Ribosome biogenesis protein NSA2 homolog
N [auth K]60S ribosomal protein L36
O [auth L]60S ribosomal protein L27a
P [auth M]60S ribosomal protein L37
Q [auth O]60S ribosomal protein L38
R [auth P]60S ribosomal protein L39
S [auth Q]60S ribosomal protein L13
B [auth 7]Probable ribosome biogenesis protein RLP24
T [auth S]60S ribosomal protein L14
60S ribosomal protein L15
60S ribosomal protein L13a
W [auth X]60S ribosomal protein L37a
X [auth Z]60S ribosomal protein L18
Y [auth a]60S ribosomal protein L19
Z [auth b]60S ribosomal protein L18a
AA [auth e]60S ribosomal protein L23
BA [auth g]60S ribosomal protein L23a
CA [auth h]60S ribosomal protein L26
C [auth 8]5.8S rRNA---
DA [auth i]60S ribosomal protein L27
EA [auth l]60S ribosomal protein L28
FA [auth m]60S ribosomal protein L8
GA [auth n]60S ribosomal protein L35a
HA [auth o]60S ribosomal protein L6
IA [auth p]60S ribosomal protein L7
JA [auth r]Coiled-coil domain-containing protein 86 -
KA [auth u]Guanine nucleotide-binding protein-like 3
LA [auth w]G Protein Nucleolar 2
MA [auth y]60S ribosomal protein L12
D [auth 9]Zinc finger protein 593
NA [auth z]Protein LLP homolog
OA [auth C]60S ribosomal protein L11
PA [auth R]60S ribosomal protein L5
QA [auth W]Notchless protein homolog 1-
RA [auth T]60S ribosomal protein L21
SA [auth 4]GTP-binding protein 4
TA [auth Y]60S ribosomal protein L17
UA [auth k]60S ribosomal protein L32
VA [auth j]60S ribosomal protein L31
WA [auth d]60S ribosomal protein L22
E [auth A]60S ribosomal protein L29
XA [auth 3]5S rRNA---
YA [auth v]mRNA turnover protein 4 homolog
ZA [auth 2]28S rRNA---
F [auth B]60S ribosomal protein L3
G [auth D]60S ribosomal protein L4
H [auth E]60S ribosomal protein L30
I [auth F]60S ribosomal protein L34

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth 6]IPR002769Translation initiation factor IF6Family
J [auth G]IPR001921Large ribosomal subunit protein eL8Family
J [auth G]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
J [auth G]IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
J [auth G]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
J [auth G]IPR018492Ribosomal protein eL8/Nhp2 familyFamily
K [auth H]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
K [auth H]IPR045059Large ribosomal subunit protein uL29, eukaryotesFamily
K [auth H]IPR001854Large ribosomal subunit protein uL29Family
K [auth H]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
L [auth I]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
L [auth I]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
L [auth I]IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
L [auth I]IPR000702Large ribosomal subunit protein uL6-likeFamily
M [auth J]IPR039411Ribosomal biogenesis NSA2 familyFamily
M [auth J]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
N [auth K]IPR000509Large ribosomal subunit protein eL36Family
N [auth K]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
O [auth L]IPR027386Ribosomal uL15, N-terminalHomologous Superfamily
O [auth L]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
O [auth L]IPR021131Large ribosomal subunit protein uL15/eL18Domain
O [auth L]IPR030878Large ribosomal subunit protein uL15Family
O [auth L]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
P [auth M]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
P [auth M]IPR001569Large ribosomal subunit protein eL37Family
P [auth M]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
P [auth M]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
Q [auth O]IPR002675Large ribosomal subunit protein eL38Family
Q [auth O]IPR038464Large ribosomal subunit protein eL38 superfamilyHomologous Superfamily
R [auth P]IPR000077Large ribosomal subunit protein eL39Family
R [auth P]IPR020083Large ribosomal subunit protein eL39, conserved siteConserved Site
R [auth P]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
S [auth Q]IPR001380Large ribosomal subunit protein eL13Family
S [auth Q]IPR018256Large ribosomal subunit protein eL13, conserved siteConserved Site
B [auth 7]IPR023438Large ribosomal subunit protein eL24Family
B [auth 7]IPR011017TRASH domainDomain
B [auth 7]IPR000988Large ribosomal subunit protein eL24-relatedFamily
B [auth 7]IPR023442Large ribosomal subunit protein eL24, conserved siteConserved Site
B [auth 7]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
T [auth S]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
T [auth S]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
T [auth S]IPR039660Large ribosomal subunit protein eL14Family
T [auth S]IPR041985Large ribosomal subunit protein eL14, KOW motifDomain
T [auth S]IPR002784Large ribosomal subunit protein eL14 domainDomain
IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
IPR000439Large ribosomal subunit protein eL15Family
IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
IPR005755Large ribosomal subunit protein uL13, eukaryotic/archaealFamily
IPR005822Large ribosomal subunit protein uL13Family
IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
W [auth X]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
W [auth X]IPR002674Large ribosomal subunit protein eL43Family
W [auth X]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
X [auth Z]IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
X [auth Z]IPR000039Large ribosomal subunit protein eL18Family
X [auth Z]IPR021131Large ribosomal subunit protein uL15/eL18Domain
X [auth Z]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
Y [auth a]IPR039547Large ribosomal subunit protein eL19Family
Y [auth a]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
Y [auth a]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
Y [auth a]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
Y [auth a]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
Y [auth a]IPR000196Large ribosomal subunit protein eL19 domainDomain
Z [auth b]IPR028877Large ribosomal subunit protein eL20Family
Z [auth b]IPR023573Large ribosomal subunit protein eL20 domainDomain
Z [auth b]IPR021138Large ribosomal subunit protein eL20, eukaryotesFamily
AA [auth e]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
AA [auth e]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
AA [auth e]IPR000218Large ribosomal subunit protein uL14Family
BA [auth g]IPR019985Large ribosomal subunit protein uL23Family
BA [auth g]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
BA [auth g]IPR013025Large ribosomal subunit protein uL23-likeFamily
BA [auth g]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
BA [auth g]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
BA [auth g]IPR005633Large ribosomal subunit protein uL23, N-terminalDomain
CA [auth h]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
CA [auth h]IPR005756Large ribosomal subunit protein uL24, eukaryotic/archaealFamily
CA [auth h]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
CA [auth h]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
CA [auth h]IPR005824KOWDomain
CA [auth h]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
DA [auth i]IPR001141Large ribosomal subunit protein eL27Family
DA [auth i]IPR018262Large ribosomal subunit protein eL27, conserved siteConserved Site
DA [auth i]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
DA [auth i]IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
DA [auth i]IPR005824KOWDomain
DA [auth i]IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
EA [auth l]IPR029004Ribosomal eL28/Mak16Domain
EA [auth l]IPR002672Large ribosomal subunit protein eL28Family
FA [auth m]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
FA [auth m]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
FA [auth m]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
FA [auth m]IPR023672Large ribosomal subunit protein uL2, archaeal-typeFamily
FA [auth m]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
FA [auth m]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
FA [auth m]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
FA [auth m]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
FA [auth m]IPR002171Large ribosomal subunit protein uL2Family
GA [auth n]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
GA [auth n]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
GA [auth n]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
GA [auth n]IPR001780Large ribosomal subunit protein eL33Family
HA [auth o]IPR005568Large ribosomal subunit protein uL6, N-terminalDomain
HA [auth o]IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
HA [auth o]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
HA [auth o]IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
HA [auth o]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
HA [auth o]IPR000915Large ribosomal subunit protein eL6Family
IA [auth p]IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
IA [auth p]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
IA [auth p]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
IA [auth p]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
IA [auth p]IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotesDomain
IA [auth p]IPR039699Large ribosomal subunit protein uL30Family
IA [auth p]IPR005998Large ribosomal subunit protein uL30, eukaryoticFamily
JA [auth r]IPR026570Coiled-coil domain-containing protein 86Family
JA [auth r]IPR005579Cgr1-likeFamily
KA [auth u]IPR030378Circularly permuted (CP)-type guanine nucleotide-binding (G) domainDomain
KA [auth u]IPR006073GTP binding domainDomain
KA [auth u]IPR014813Guanine nucleotide-binding protein-like 3, N-terminal domainDomain
KA [auth u]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
LA [auth w]IPR030378Circularly permuted (CP)-type guanine nucleotide-binding (G) domainDomain
LA [auth w]IPR024929Nucleolar GTP-binding protein 2, circularly permuted GTPase motifDomain
LA [auth w]IPR006073GTP binding domainDomain
LA [auth w]IPR012971Nucleolar GTP-binding protein 2, N-terminal domainDomain
LA [auth w]IPR023179GTP-binding protein, orthogonal bundle domain superfamilyHomologous Superfamily
LA [auth w]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
MA [auth y]IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
MA [auth y]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
MA [auth y]IPR000911Ribosomal protein uL11Family
MA [auth y]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
MA [auth y]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
MA [auth y]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
D [auth 9]IPR003604Matrin/U1-C-like, C2H2-type zinc fingerDomain
D [auth 9]IPR013087Zinc finger C2H2-typeDomain
D [auth 9]IPR036236Zinc finger C2H2 superfamilyHomologous Superfamily
D [auth 9]IPR022755Zinc finger, double-stranded RNA bindingDomain
NA [auth z]IPR018784Learning associated protein 18-likeFamily
OA [auth C]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
OA [auth C]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
OA [auth C]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
OA [auth C]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
OA [auth C]IPR002132Large ribosomal subunit protein uL5Family
PA [auth R]IPR005485Large ribosomal subunit protein uL18 eukaryotic/archaealFamily
PA [auth R]IPR025607Large ribosomal subunit protein uL18, C-terminal, eukaryotesDomain
QA [auth W]IPR019775WD40 repeat, conserved siteConserved Site
QA [auth W]IPR012972NLEDomain
QA [auth W]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
QA [auth W]IPR001632G-protein, beta subunitDomain
QA [auth W]IPR001680WD40 repeatRepeat
QA [auth W]IPR020472G-protein beta WD-40 repeatRepeat
QA [auth W]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
RA [auth T]IPR001147Large ribosomal subunit protein eL21Family
RA [auth T]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
RA [auth T]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
RA [auth T]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
SA [auth 4]IPR024926Nucleolar GTP-binding protein 1Family
SA [auth 4]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
SA [auth 4]IPR031167OBG-type guanine nucleotide-binding (G) domainDomain
SA [auth 4]IPR012973NOG, C-terminalDomain
SA [auth 4]IPR010674Nucleolar GTP-binding protein 1, Rossman-fold domainDomain
SA [auth 4]IPR041623NOG1, N-terminal helical domainDomain
SA [auth 4]IPR005225Small GTP-binding protein domainDomain
SA [auth 4]IPR006073GTP binding domainDomain
TA [auth Y]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
TA [auth Y]IPR001063Large ribosomal subunit protein uL22Family
TA [auth Y]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
TA [auth Y]IPR005721Large ribosomal subunit protein uL22, eukaryotic/archaealFamily
UA [auth k]IPR001515Large ribosomal subunit protein eL32Family
UA [auth k]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
UA [auth k]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
VA [auth j]IPR000054Large ribosomal subunit protein eL31Family
VA [auth j]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
VA [auth j]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
WA [auth d]IPR038526Large ribosomal subunit protein eL22 superfamilyHomologous Superfamily
WA [auth d]IPR002671Large ribosomal subunit protein eL22Family
E [auth A]IPR002673Large ribosomal subunit protein eL29Family
YA [auth v]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
YA [auth v]IPR001790Large ribosomal subunit protein uL10Family
YA [auth v]IPR043164Large ribosomal subunit protein uL10-like, insertion domain superfamilyHomologous Superfamily
YA [auth v]IPR040637Large ribosomal subunit protein uL10-like, insertion domainDomain
YA [auth v]IPR033867Ribosome assembly factor Mrt4Family
F [auth B]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
F [auth B]IPR045077Large ribosomal subunit protein uL3, archaeal/eukaryotic-typeFamily
F [auth B]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
F [auth B]IPR000597Large ribosomal subunit protein uL3Family
F [auth B]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
G [auth D]IPR045240Large ribosomal subunit protein uL4, eukaryotic and archaeal typeFamily
G [auth D]IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
G [auth D]IPR002136Large ribosomal subunit protein uL4Family
G [auth D]IPR013000Large ribosomal subunit protein uL4, eukaryotic/archaeal, conserved siteConserved Site
G [auth D]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
H [auth E]IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
H [auth E]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
H [auth E]IPR000231Large ribosomal subunit protein eL30Family
H [auth E]IPR039109Large ribosomal subunit protein eL30-likeFamily
H [auth E]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
I [auth F]IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site
I [auth F]IPR008195Large ribosomal subunit protein eL34Family

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A [auth 6]PharosP56537
J [auth G]PharosP62424
K [auth H]PharosP42766
L [auth I]PharosP32969
M [auth J]PharosO95478
N [auth K]PharosQ9Y3U8
O [auth L]PharosP46776
P [auth M]PharosP61927
Q [auth O]PharosP63173
S [auth Q]PharosP26373
B [auth 7]PharosQ9UHA3
T [auth S]PharosP50914
PharosP61313
PharosP40429
W [auth X]PharosP61513
X [auth Z]PharosQ07020
Y [auth a]PharosP84098
AA [auth e]PharosP62829
BA [auth g]PharosP62750
CA [auth h]PharosP61254
DA [auth i]PharosP61353
EA [auth l]PharosP46779
GA [auth n]PharosP18077
HA [auth o]PharosQ02878
IA [auth p]PharosP18124
JA [auth r]PharosQ9H6F5
KA [auth u]PharosQ9BVP2
LA [auth w]PharosQ13823
MA [auth y]PharosP30050
D [auth 9]PharosO00488
NA [auth z]PharosQ9BRT6
OA [auth C]PharosP62913
PA [auth R]PharosP46777
QA [auth W]PharosQ9NVX2
RA [auth T]PharosP46778
SA [auth 4]PharosQ9BZE4
TA [auth Y]PharosP18621
UA [auth k]PharosP62910
VA [auth j]PharosP62899
WA [auth d]PharosP35268
YA [auth v]PharosQ9UKD2
F [auth B]PharosP39023
G [auth D]PharosP36578
H [auth E]PharosP62888
I [auth F]PharosP49207