The recombinant NZ-1 Fab complexed with the PDZ tandem fragment of A. aeolicus S2P homolog with the PA14 tag inserted between the residues 181 and 184
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| C [auth A] | V-set | e8ipcA1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: V-set | ECOD (v295.2) |
| B [auth L] | V-set | e8ipcL1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: V-set | ECOD (v295.2) |
| A [auth H] | e8ipcH01 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: | ECOD (v295.2) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| C [auth A] | PF17820 | PDZ domain (PDZ_6) | PDZ domain | This entry represents the PDZ domain from a wide variety of proteins. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| C [auth A] | Putative zinc metalloprotease aq_1964 | |||
| B [auth L] | The recombinantly-expressed light chain of the monoclonal antibody NZ-1 | - | - | - |
| A [auth H] | The recombinantly-expressed heavy chain of the monoclonal antibody NZ-1 | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| C [auth A] | IPR004387 | Peptidase M50, putative membrane-associated zinc metallopeptidase | Family |
| C [auth A] | IPR041489 | PDZ domain 6 | Domain |
| C [auth A] | IPR008915 | Peptidase M50 | Domain |
| C [auth A] | IPR001478 | PDZ domain | Domain |
| C [auth A] | IPR036034 | PDZ superfamily | Homologous Superfamily |
Protein Modification Annotation
| Modified Residue(s) | ||
|---|---|---|
| Chain | Residue(s) | Description |
| C [auth A] | SNN | Parent Component: ASN : AA0302 , AA0593 : L-aspartimide MOD:00307 , 2-(2-aminosuccinimidyl)pentanedioic acid (Asn) MOD:01940 , 2-(2-aminosuccinimidyl)pentanedioic acid (Asp) MOD:01941 |
| B [auth L] | PCA | Parent Component: GLN : AA0302 , AA0593 , AA0031 : L-aspartimide MOD:00307 , 2-(2-aminosuccinimidyl)pentanedioic acid (Asn) MOD:01940 , 2-(2-aminosuccinimidyl)pentanedioic acid (Asp) MOD:01941 , 2-pyrrolidone-5-carboxylic acid (Gln) MOD:00040 , 2-pyrrolidone-5-carboxylic acid (Glu) MOD:00420 |