8IMY | pdb_00008imy

Cryo-EM structure of GPI-T (inactive mutant) with GPI and proULBP2, a proprotein substrate

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Membrane Protein Annotation: MemProtMD

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F [auth D]	Ribosomal_S3Ae	e8imyD01	A: a/b three-layered sandwiches	X: ATP-grasp_6	H: ATP-grasp_6	T: ATP-grasp_6	F: Ribosomal_S3Ae	ECOD (v294.1)
B [auth K]	Ribosomal_S3Ae	e8imyK01	A: a/b three-layered sandwiches	X: ATP-grasp_6	H: ATP-grasp_6	T: ATP-grasp_6	F: Ribosomal_S3Ae	ECOD (v294.1)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
F [auth D]	UL16-binding protein 2	natural killer cell lectin-like receptor binding protein binding binding signaling receptor binding molecular function activator activity molecular function regulator activity signaling receptor regulator activity receptor ligand activity signaling receptor activator activity lipid binding phospholipid binding GPI anchor binding glycolipid binding carbohydrate derivative binding natural killer cell lectin-like receptor binding protein binding binding signaling receptor binding molecular function activator activity molecular function regulator activity signaling receptor regulator activity receptor ligand activity signaling receptor activator activity lipid binding phospholipid binding GPI anchor binding glycolipid binding carbohydrate derivative binding phosphatidylinositol binding	lymphocyte mediated immunity biological process involved in interspecies interaction between organisms response to stimulus immune response response to other organism defense response defense response to symbiont response to external stimulus leukocyte mediated cytotoxicity response to biotic stimulus immune effector process immune system process defense response to other organism response to stress natural killer cell mediated cytotoxicity lymphocyte mediated immunity biological process involved in interspecies interaction between organisms response to stimulus immune response response to other organism defense response defense response to symbiont response to external stimulus leukocyte mediated cytotoxicity response to biotic stimulus immune effector process immune system process defense response to other organism response to stress natural killer cell mediated cytotoxicity innate immune response leukocyte mediated immunity cellular process response to external biotic stimulus natural killer cell mediated immunity cell killing multicellular organismal process cell activation natural killer cell activation lymphocyte activation leukocyte activation antigen processing and presentation antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway antigen processing and presentation of endogenous peptide antigen antigen processing and presentation of peptide antigen via MHC class I antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-independent antigen processing and presentation of peptide antigen antigen processing and presentation of endogenous antigen antigen processing and presentation of endogenous peptide antigen via MHC class I antigen processing and presentation of endogenous peptide antigen via MHC class Ib antigen processing and presentation of peptide antigen via MHC class Ib antigen processing and presentation via MHC class Ib adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains regulation of immune effector process T cell mediated immunity positive regulation of leukocyte mediated immunity regulation of cellular process positive regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains positive regulation of lymphocyte mediated immunity positive regulation of biological process positive regulation of response to stimulus regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains positive regulation of immune response positive regulation of leukocyte mediated cytotoxicity regulation of immune system process positive regulation of immune effector process positive regulation of adaptive immune response positive regulation of immune system process positive regulation of cellular process regulation of T cell mediated immunity T cell mediated cytotoxicity regulation of biological process positive regulation of T cell mediated cytotoxicity regulation of adaptive immune response biological regulation regulation of leukocyte mediated cytotoxicity adaptive immune response regulation of leukocyte mediated immunity regulation of T cell mediated cytotoxicity regulation of lymphocyte mediated immunity regulation of response to stimulus positive regulation of T cell mediated immunity regulation of immune response regulation of cell killing positive regulation of cell killing	cell periphery cellular anatomical structure cell surface membrane plasma membrane external side of plasma membrane side of membrane extracellular region extracellular space membrane-bounded organelle intracellular organelle intracellular anatomical structure organelle endoplasmic reticulum cell periphery cellular anatomical structure cell surface membrane plasma membrane external side of plasma membrane side of membrane extracellular region extracellular space membrane-bounded organelle intracellular organelle intracellular anatomical structure organelle endoplasmic reticulum cytoplasm intracellular membrane-bounded organelle endomembrane system
E [auth S]	GPI transamidase component PIG-S,GFP-like fluorescent chromoprotein cFP484	-	bioluminescence metabolic process cellular process generation of precursor metabolites and energy	-
D [auth T]	GPI transamidase component PIG-T,GFP-like fluorescent chromoprotein cFP484	-	bioluminescence metabolic process cellular process generation of precursor metabolites and energy	-
C [auth U]	Phosphatidylinositol glycan anchor biosynthesis class U protein,GFP-like fluorescent chromoprotein cFP484	-	bioluminescence metabolic process cellular process generation of precursor metabolites and energy	-
B [auth K]	GPI-anchor transamidase,GFP-like fluorescent chromoprotein cFP484	-	bioluminescence metabolic process cellular process generation of precursor metabolites and energy	-
A [auth G]	Glycosylphosphatidylinositol anchor attachment 1 protein,GFP-like fluorescent chromoprotein cFP484	-	bioluminescence metabolic process cellular process generation of precursor metabolites and energy	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
F [auth D]	IPR050208	Antigen-presenting and immune regulatory MHC class I-related	Family
F [auth D]	IPR037055	MHC class I-like antigen recognition-like superfamily	Homologous Superfamily
F [auth D]	IPR011161	MHC class I-like antigen recognition-like	Domain
F [auth D]	IPR011162	MHC classes I/II-like antigen recognition protein	Homologous Superfamily
E [auth S]	IPR000786	Green fluorescent protein, GFP	Family
E [auth S]	IPR011584	Green fluorescent protein-related	Family
E [auth S]	IPR009017	Green fluorescent protein	Homologous Superfamily
D [auth T]	IPR000786	Green fluorescent protein, GFP	Family
D [auth T]	IPR011584	Green fluorescent protein-related	Family
D [auth T]	IPR009017	Green fluorescent protein	Homologous Superfamily
C [auth U]	IPR000786	Green fluorescent protein, GFP	Family
C [auth U]	IPR011584	Green fluorescent protein-related	Family
C [auth U]	IPR009017	Green fluorescent protein	Homologous Superfamily
B [auth K]	IPR000786	Green fluorescent protein, GFP	Family
B [auth K]	IPR011584	Green fluorescent protein-related	Family
B [auth K]	IPR009017	Green fluorescent protein	Homologous Superfamily
A [auth G]	IPR000786	Green fluorescent protein, GFP	Family
A [auth G]	IPR011584	Green fluorescent protein-related	Family
A [auth G]	IPR009017	Green fluorescent protein	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
F [auth D]	Pharos: Q9BZM5	pancreatic intraductal papillary-mucinous neoplasm skin basal cell carcinoma adrenal cortex carcinoma atypical teratoid rhabdoid tumor ductal breast carcinoma in situ gastric neoplasm malignant ependymoma malignant pancreatic neoplasm osteosarcoma pilocytic astrocytoma tuberculosis alopecia areata breast cancer esophageal adenocarcinoma hereditary diffuse gastric adenocarcinoma pancreatic intraductal papillary-mucinous neoplasm skin basal cell carcinoma adrenal cortex carcinoma atypical teratoid rhabdoid tumor ductal breast carcinoma in situ gastric neoplasm malignant ependymoma malignant pancreatic neoplasm osteosarcoma pilocytic astrocytoma tuberculosis alopecia areata breast cancer esophageal adenocarcinoma hereditary diffuse gastric adenocarcinoma malignant mesothelioma non-small cell lung carcinoma pancreatic intraductal papillary-mucinous carcinoma psoriasis astrocytic tumor cystic fibrosis gastric cancer large cell medulloblastoma Malignant neoplasm of stomach oligodendroglioma

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
F [auth D]	MemProtMD	Annotated as membrane protein by MemProtMD

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

Prepare Data

Validate Data

Deposit Data

Help and Resources

.id_divider{ color: #ccc; padding: 0 10px 0 10px; } .extended_id_info{ color: #ccc; font-size: 18px; position: relative; top: -10px; left: 4px; } 8IMY | pdb_00008imy