8IKA | pdb_00008ika

Cryo-EM structure of the encapsulin shell from Mycobacterium tuberculosis

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
ZA [auth Aq]	UBA	e8ikaAq1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UBA	ECOD (v295)
Z [auth AQ]	UBA	e8ikaAQ1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UBA	ECOD (v295)
YA [auth Ap]	UBA	e8ikaAp1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UBA	ECOD (v295)
Y [auth AP]	UBA	e8ikaAP1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UBA	ECOD (v295)
XA [auth Ao]	UBA	e8ikaAo1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UBA	ECOD (v295)
X [auth AO]	UBA	e8ikaAO1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UBA	ECOD (v295)
WA [auth An]	UBA	e8ikaAn1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UBA	ECOD (v295)
W [auth AN]	UBA	e8ikaAN1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UBA	ECOD (v295)
VA [auth Am]	UBA	e8ikaAm1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UBA	ECOD (v295)
V [auth AM]	UBA	e8ikaAM1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UBA	ECOD (v295)
UA [auth Al]	UBA	e8ikaAl1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UBA	ECOD (v295)
U [auth AL]	UBA	e8ikaAL1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UBA	ECOD (v295)
TA [auth Ak]	UBA	e8ikaAk1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UBA	ECOD (v295)
T [auth AK]	UBA	e8ikaAK1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UBA	ECOD (v295)
SA [auth Aj]	UBA	e8ikaAj1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UBA	ECOD (v295)
S [auth AJ]	UBA	e8ikaAJ1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UBA	ECOD (v295)
RA [auth Ai]	UBA	e8ikaAi1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UBA	ECOD (v295)
R [auth AI]	UBA	e8ikaAI1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UBA	ECOD (v295)
QA [auth Ah]	UBA	e8ikaAh1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UBA	ECOD (v295)
Q [auth AH]	UBA	e8ikaAH1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UBA	ECOD (v295)
PA [auth Ag]	UBA	e8ikaAg1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UBA	ECOD (v295)
P [auth AG]	UBA	e8ikaAG1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UBA	ECOD (v295)
OA [auth Af]	UBA	e8ikaAf1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UBA	ECOD (v295)
O [auth AF]	UBA	e8ikaAF1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UBA	ECOD (v295)
NA [auth Ae]	UBA	e8ikaAe1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UBA	ECOD (v295)
N [auth AE]	UBA	e8ikaAE1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UBA	ECOD (v295)
MA [auth Ad]	UBA	e8ikaAd1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UBA	ECOD (v295)
M [auth AD]	UBA	e8ikaAD1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UBA	ECOD (v295)
LA [auth Ac]	UBA	e8ikaAc1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UBA	ECOD (v295)
L [auth AC]	UBA	e8ikaAC1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UBA	ECOD (v295)
KA [auth Ab]	UBA	e8ikaAb1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UBA	ECOD (v295)
K [auth AB]	UBA	e8ikaAB1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UBA	ECOD (v295)
JA [auth Aa]	UBA	e8ikaAa1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UBA	ECOD (v295)
J [auth AA]	UBA	e8ikaAA1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UBA	ECOD (v295)
IA [auth AZ]	UBA	e8ikaAZ1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UBA	ECOD (v295)
I [auth A9]	UBA	e8ikaA91	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UBA	ECOD (v295)
HB [auth Ay]	UBA	e8ikaAy1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UBA	ECOD (v295)
HA [auth AY]	UBA	e8ikaAY1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UBA	ECOD (v295)
H [auth A8]	UBA	e8ikaA81	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UBA	ECOD (v295)
GB [auth Ax]	UBA	e8ikaAx1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UBA	ECOD (v295)
GA [auth AX]	UBA	e8ikaAX1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UBA	ECOD (v295)
G [auth A7]	UBA	e8ikaA71	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UBA	ECOD (v295)
FB [auth Aw]	UBA	e8ikaAw1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UBA	ECOD (v295)
FA [auth AW]	UBA	e8ikaAW1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UBA	ECOD (v295)
F [auth A6]	UBA	e8ikaA61	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UBA	ECOD (v295)
EB [auth Av]	UBA	e8ikaAv1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UBA	ECOD (v295)
EA [auth AV]	UBA	e8ikaAV1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UBA	ECOD (v295)
E [auth A5]	UBA	e8ikaA51	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UBA	ECOD (v295)
DB [auth Au]	UBA	e8ikaAu1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UBA	ECOD (v295)
DA [auth AU]	UBA	e8ikaAU1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UBA	ECOD (v295)
D [auth A4]	UBA	e8ikaA41	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UBA	ECOD (v295)
CB [auth At]	UBA	e8ikaAt1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UBA	ECOD (v295)
CA [auth AT]	UBA	e8ikaAT1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UBA	ECOD (v295)
C [auth A3]	UBA	e8ikaA31	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UBA	ECOD (v295)
BB [auth As]	UBA	e8ikaAs1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UBA	ECOD (v295)
BA [auth AS]	UBA	e8ikaAS1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UBA	ECOD (v295)
B [auth A2]	UBA	e8ikaA21	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UBA	ECOD (v295)
AB [auth Ar]	UBA	e8ikaAr1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UBA	ECOD (v295)
AA [auth AR]	UBA	e8ikaAR1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UBA	ECOD (v295)
A [auth A1]	UBA	e8ikaA11	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: UBA	ECOD (v295)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth A1], AA [auth AR], AB [auth Ar], B [auth A2], BA [auth AS], A [auth A1], AA [auth AR], AB [auth Ar], B [auth A2], BA [auth AS], BB [auth As], C [auth A3], CA [auth AT], CB [auth At], D [auth A4], DA [auth AU], DB [auth Au], E [auth A5], EA [auth AV], EB [auth Av], F [auth A6], FA [auth AW], FB [auth Aw], G [auth A7], GA [auth AX], GB [auth Ax], H [auth A8], HA [auth AY], HB [auth Ay], I [auth A9], IA [auth AZ], J [auth AA], JA [auth Aa], K [auth AB], KA [auth Ab], L [auth AC], LA [auth Ac], M [auth AD], MA [auth Ad], N [auth AE], NA [auth Ae], O [auth AF], OA [auth Af], P [auth AG], PA [auth Ag], Q [auth AH], QA [auth Ah], R [auth AI], RA [auth Ai], S [auth AJ], SA [auth Aj], T [auth AK], TA [auth Ak], U [auth AL], UA [auth Al], V [auth AM], VA [auth Am], W [auth AN], WA [auth An], X [auth AO], XA [auth Ao], Y [auth AP], YA [auth Ap], Z [auth AQ], ZA [auth Aq]	PF04454	Encapsulating protein for peroxidase (Linocin_M18)	Encapsulating protein for peroxidase	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth A1], AA [auth AR], AB [auth Ar], B [auth A2], BA [auth AS], A [auth A1], AA [auth AR], AB [auth Ar], B [auth A2], BA [auth AS], BB [auth As], C [auth A3], CA [auth AT], CB [auth At], D [auth A4], DA [auth AU], DB [auth Au], E [auth A5], EA [auth AV], EB [auth Av], F [auth A6], FA [auth AW], FB [auth Aw], G [auth A7], GA [auth AX], GB [auth Ax], H [auth A8], HA [auth AY], HB [auth Ay], I [auth A9], IA [auth AZ], J [auth AA], JA [auth Aa], K [auth AB], KA [auth Ab], L [auth AC], LA [auth Ac], M [auth AD], MA [auth Ad], N [auth AE], NA [auth Ae], O [auth AF], OA [auth Af], P [auth AG], PA [auth Ag], Q [auth AH], QA [auth Ah], R [auth AI], RA [auth Ai], S [auth AJ], SA [auth Aj], T [auth AK], TA [auth Ak], U [auth AL], UA [auth Al], V [auth AM], VA [auth Am], W [auth AN], WA [auth An], X [auth AO], XA [auth Ao], Y [auth AP], YA [auth Ap], Z [auth AQ], ZA [auth Aq]	Type 1 encapsulin shell protein	-	-	cell periphery cellular anatomical structure plasma membrane membrane extracellular region intracellular organelle intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle encapsulin nanocompartment

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth A1], AA [auth AR], AB [auth Ar], B [auth A2], BA [auth AS], A [auth A1], AA [auth AR], AB [auth Ar], B [auth A2], BA [auth AS], BB [auth As], C [auth A3], CA [auth AT], CB [auth At], D [auth A4], DA [auth AU], DB [auth Au], E [auth A5], EA [auth AV], EB [auth Av], F [auth A6], FA [auth AW], FB [auth Aw], G [auth A7], GA [auth AX], GB [auth Ax], H [auth A8], HA [auth AY], HB [auth Ay], I [auth A9], IA [auth AZ], J [auth AA], JA [auth Aa], K [auth AB], KA [auth Ab], L [auth AC], LA [auth Ac], M [auth AD], MA [auth Ad], N [auth AE], NA [auth Ae], O [auth AF], OA [auth Af], P [auth AG], PA [auth Ag], Q [auth AH], QA [auth Ah], R [auth AI], RA [auth Ai], S [auth AJ], SA [auth Aj], T [auth AK], TA [auth Ak], U [auth AL], UA [auth Al], V [auth AM], VA [auth Am], W [auth AN], WA [auth An], X [auth AO], XA [auth Ao], Y [auth AP], YA [auth Ap], Z [auth AQ], ZA [auth Aq]	IPR007544	Type 1 encapsulin shell protein	Family
A [auth A1], AA [auth AR], AB [auth Ar], B [auth A2], BA [auth AS], A [auth A1], AA [auth AR], AB [auth Ar], B [auth A2], BA [auth AS], BB [auth As], C [auth A3], CA [auth AT], CB [auth At], D [auth A4], DA [auth AU], DB [auth Au], E [auth A5], EA [auth AV], EB [auth Av], F [auth A6], FA [auth AW], FB [auth Aw], G [auth A7], GA [auth AX], GB [auth Ax], H [auth A8], HA [auth AY], HB [auth Ay], I [auth A9], IA [auth AZ], J [auth AA], JA [auth Aa], K [auth AB], KA [auth Ab], L [auth AC], LA [auth Ac], M [auth AD], MA [auth Ad], N [auth AE], NA [auth Ae], O [auth AF], OA [auth Af], P [auth AG], PA [auth Ag], Q [auth AH], QA [auth Ah], R [auth AI], RA [auth Ai], S [auth AJ], SA [auth Aj], T [auth AK], TA [auth Ak], U [auth AL], UA [auth Al], V [auth AM], VA [auth Am], W [auth AN], WA [auth An], X [auth AO], XA [auth Ao], Y [auth AP], YA [auth Ap], Z [auth AQ], ZA [auth Aq]	IPR051429	Encapsulin nanocompartment	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.