Structure of Semliki Forest virus VLP in complex with the receptor VLDLR-LA3
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| O | SCOP2B Superfamily | LDL receptor-like module | 8035671 | 3000728 | SCOP2B (2022-06-29) |
| N | SCOP2B Superfamily | LDL receptor-like module | 8035671 | 3000728 | SCOP2B (2022-06-29) |
| M | SCOP2B Superfamily | LDL receptor-like module | 8035671 | 3000728 | SCOP2B (2022-06-29) |
| L | SCOP2B Superfamily | Trypsin-like serine proteases | 8042286 | 3000114 | SCOP2B (2022-06-29) |
| I | SCOP2B Superfamily | Trypsin-like serine proteases | 8042286 | 3000114 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | Trypsin-like serine proteases | 8042286 | 3000114 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | Trypsin-like serine proteases | 8042286 | 3000114 | SCOP2B (2022-06-29) |
| K | SCOP2B Superfamily | Viral glycoprotein, central and dimerisation domains | 8037191 | 3000293 | SCOP2B (2022-06-29) |
| K | SCOP2B Superfamily | E set domains | 8054997 | 3000070 | SCOP2B (2022-06-29) |
| H | SCOP2B Superfamily | E set domains | 8054997 | 3000070 | SCOP2B (2022-06-29) |
| H | SCOP2B Superfamily | Viral glycoprotein, central and dimerisation domains | 8037191 | 3000293 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | Viral glycoprotein, central and dimerisation domains | 8037191 | 3000293 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | E set domains | 8054997 | 3000070 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | E set domains | 8054997 | 3000070 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | Viral glycoprotein, central and dimerisation domains | 8037191 | 3000293 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| O | UBA | e8ihpO1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: UBA | ECOD (v295) |
| N | UBA | e8ihpN1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: UBA | ECOD (v295) |
| M | UBA | e8ihpM1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: UBA | ECOD (v295) |
| L | UBA | e8ihpL1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: UBA | ECOD (v295) |
| I | UBA | e8ihpI1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: UBA | ECOD (v295) |
| F | UBA | e8ihpF1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: UBA | ECOD (v295) |
| C | UBA | e8ihpC1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: UBA | ECOD (v295) |
| K | UBA | e8ihpK1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: UBA | ECOD (v295) |
| H | UBA | e8ihpH1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: UBA | ECOD (v295) |
| E | UBA | e8ihpE1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: UBA | ECOD (v295) |
| B | UBA | e8ihpB1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: UBA | ECOD (v295) |
| J | EF-hand_1, EF-hand_6, EF-hand_7 | e8ihpJ1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: EF-hand_1, EF-hand_6, EF-hand_7 | ECOD (v295) |
| G | EF-hand_1, EF-hand_6, EF-hand_7 | e8ihpG1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: EF-hand_1, EF-hand_6, EF-hand_7 | ECOD (v295) |
| D | EF-hand_1, EF-hand_6, EF-hand_7 | e8ihpD1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: EF-hand_1, EF-hand_6, EF-hand_7 | ECOD (v295) |
| A | IBR | e8ihpA01 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: IBR | ECOD (v295) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF00057 | Low-density lipoprotein receptor domain class A (Ldl_recept_a) | Low-density lipoprotein receptor domain class A | - | Repeat | |
| PF00944 | Alphavirus core protein (Peptidase_S3) | Alphavirus core protein | Also known as coat protein C and capsid protein C. This makes the literature very confusing. Alphaviruses consist of a nucleoprotein core, a lipid membrane which envelopes the core, and glycoprotein spikes protruding from the lipid membrane. | Domain | |
| PF01589 | Alphavirus E1 glycoprotein (Alpha_E1_glycop) | Alphavirus E1 glycoprotein | - | Family | |
| PF00943 | Alphavirus E2 glycoprotein (Alpha_E2_glycop) | Alphavirus E2 glycoprotein | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Pharos: Disease Associations Pharos Homepage Annotation
Membrane Protein Annotation: OPM OPM Database Homepage
| Chains | External Link | Type | Class | Superfamily | Family |
|---|---|---|---|---|---|
| OPM | Transmembrane | Bitopic proteins | Viral membrane fusion glycoprotein | Alphavirus E1 glycoprotein |














