8IFM | pdb_00008ifm

Cryo-EM structure of tetrameric SPARTA gRNA-ssDNA target complex in state 2

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
H [auth O]DNA_topoisoIVe8ifmO1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
F [auth K]DNA_topoisoIVe8ifmK1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
D [auth G]DNA_topoisoIVe8ifmG1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)
BDNA_topoisoIVe8ifmB1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: DNA_topoisoIVECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A,
C [auth F],
E [auth J],
G [auth N]		PF13676TIR domain (TIR_2)TIR domainThis is a family of Toll-like receptors. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
J [auth D],
L [auth I],
N [auth M],
P [auth Q]		target ssDNA---
I [auth C],
K [auth H],
M [auth L],
O [auth P]		guide RNA---
B,
D [auth G],
F [auth K],
H [auth O]		Piwi domain-containing protein - -
A,
C [auth F],
E [auth J],
G [auth N]		TIR domain-containing protein -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B,
D [auth G],
F [auth K],
H [auth O]		IPR036397Ribonuclease H superfamilyHomologous Superfamily
B,
D [auth G],
F [auth K],
H [auth O]		IPR012337Ribonuclease H-like superfamilyHomologous Superfamily
A,
C [auth F],
E [auth J],
G [auth N]		IPR000157Toll/interleukin-1 receptor homology (TIR) domainDomain
A,
C [auth F],
E [auth J],
G [auth N]		IPR035897Toll/interleukin-1 receptor homology (TIR) domain superfamilyHomologous Superfamily