8IF6 | pdb_00008if6

Conformational Dynamics of the D53-D3-D14 Complex in Strigolactone Signaling

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C [auth B]	V-set	e8if6B1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: V-set	ECOD (v294.2)
B [auth C]	V-set	e8if6C1	A: beta barrels	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: V-set	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C [auth B]	PF03931	Skp1 family, tetramerisation domain (Skp1_POZ)	Skp1 family, tetramerisation domain		Domain
C [auth B]	PF01466	Skp1 family, dimerisation domain (Skp1)	Skp1 family, dimerisation domain		Domain
B [auth C]	PF12697	Alpha/beta hydrolase family (Abhydrolase_6)	Alpha/beta hydrolase family	This family contains alpha/beta hydrolase enzymes of diverse specificity.	Domain
A	PF12937	F-box-like (F-box-like)	F-box-like	This is an F-box-like family.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C [auth B]	SKP1-like protein 20	protein binding binding cullin family protein binding	cellular response to stimulus regulation of cellular process response to lipid response to stimulus signaling hormone-mediated signaling pathway cell communication cellular response to endogenous stimulus cellular response to jasmonic acid stimulus response to hormone signal transduction cellular response to hormone stimulus regulation of biological process response to jasmonic acid cellular response to stimulus regulation of cellular process response to lipid response to stimulus signaling hormone-mediated signaling pathway cell communication cellular response to endogenous stimulus cellular response to jasmonic acid stimulus response to hormone signal transduction cellular response to hormone stimulus regulation of biological process response to jasmonic acid response to fatty acid response to endogenous stimulus biological regulation response to oxygen-containing compound jasmonic acid mediated signaling pathway cellular response to oxygen-containing compound cellular response to fatty acid cellular response to chemical stimulus response to chemical cellular response to lipid cellular process primary metabolic process protein ubiquitination macromolecule modification metabolic process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal catabolic process proteasomal protein catabolic process protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process SCF-dependent proteasomal ubiquitin-dependent protein catabolic process ubiquitin-dependent protein catabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle
B [auth C]	Strigolactone esterase D14	hydrolase activity catalytic activity	developmental process multicellular organismal process shoot system morphogenesis shoot axis formation anatomical structure morphogenesis multicellular organism development morphogenesis of a branching structure secondary shoot formation anatomical structure development anatomical structure formation involved in morphogenesis shoot system development plant organ formation system development isoprenoid biosynthetic process developmental process multicellular organismal process shoot system morphogenesis shoot axis formation anatomical structure morphogenesis multicellular organism development morphogenesis of a branching structure secondary shoot formation anatomical structure development anatomical structure formation involved in morphogenesis shoot system development plant organ formation system development isoprenoid biosynthetic process strigolactone biosynthetic process sesquiterpenoid metabolic process lipid biosynthetic process primary metabolic process terpenoid biosynthetic process biosynthetic process lactone biosynthetic process lactone metabolic process metabolic process cellular process sesquiterpenoid biosynthetic process strigolactone metabolic process terpenoid metabolic process isoprenoid metabolic process lipid metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle
A	F-box/LRR-repeat MAX2 homolog	-	developmental process multicellular organismal process regulation of biological process regulation of developmental process biological regulation shoot system morphogenesis multicellular organism development anatomical structure morphogenesis regulation of shoot system morphogenesis anatomical structure development shoot system development regulation of anatomical structure morphogenesis system development developmental growth developmental process multicellular organismal process regulation of biological process regulation of developmental process biological regulation shoot system morphogenesis multicellular organism development anatomical structure morphogenesis regulation of shoot system morphogenesis anatomical structure development shoot system development regulation of anatomical structure morphogenesis system development developmental growth morphogenesis of a branching structure growth bud dilation developmental growth involved in morphogenesis catabolic process primary metabolic process proteasomal protein catabolic process protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process SCF-dependent proteasomal ubiquitin-dependent protein catabolic process ubiquitin-dependent protein catabolic process metabolic process cellular process protein metabolic process macromolecule metabolic process	cullin-RING ubiquitin ligase complex protein-containing complex ubiquitin ligase complex catalytic complex SCF ubiquitin ligase complex transferase complex intracellular protein-containing complex membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth B]	IPR016073	SKP1 component, POZ domain	Domain
C [auth B]	IPR016072	SKP1 component, dimerisation	Domain
C [auth B]	IPR036296	SKP1-like, dimerisation domain superfamily	Homologous Superfamily
C [auth B]	IPR011333	SKP1/BTB/POZ domain superfamily	Homologous Superfamily
C [auth B]	IPR001232	S-phase kinase-associated protein 1-like	Family
C [auth B]	IPR016897	S-phase kinase-associated protein 1	Family
B [auth C]	IPR000073	Alpha/beta hydrolase fold-1	Domain
B [auth C]	IPR029058	Alpha/Beta hydrolase fold	Homologous Superfamily
A	IPR036047	F-box-like domain superfamily	Homologous Superfamily
A	IPR032675	Leucine-rich repeat domain superfamily	Homologous Superfamily
A	IPR001810	F-box domain	Domain
A	IPR006553	Leucine-rich repeat, cysteine-containing subtype	Repeat

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.